Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2819
Gene name Gene Name - the full gene name approved by the HGNC.
Glycerol-3-phosphate dehydrogenase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GPD1
Synonyms (NCBI Gene) Gene synonyms aliases
GPD-C, GPDH-C, HTGTI
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HTGTI
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q13.12
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the NAD-dependent glycerol-3-phosphate dehydrogenase family. The encoded protein plays a critical role in carbohydrate and lipid metabolism by catalyzing the reversible conversion of dihydroxyacetone phosphate (DHAP) and redu
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs199673455 G>A,C Pathogenic Missense variant, coding sequence variant
rs200327418 G>C Pathogenic Splice acceptor variant
rs746781699 AA>- Likely-pathogenic Coding sequence variant, frameshift variant
rs1555188332 ->A Pathogenic Frameshift variant, coding sequence variant
rs1592303371 G>A Likely-pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001842 hsa-miR-103a-3p Luciferase reporter assay 15131085
MIRT530781 hsa-miR-6793-3p PAR-CLIP 22012620
MIRT530780 hsa-miR-361-3p PAR-CLIP 22012620
MIRT530779 hsa-miR-3162-3p PAR-CLIP 22012620
MIRT530778 hsa-miR-6752-3p PAR-CLIP 22012620
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004367 Function Glycerol-3-phosphate dehydrogenase [NAD+] activity IBA 21873635
GO:0004368 Function Glycerol-3-phosphate dehydrogenase (quinone) activity IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0005829 Component Cytosol IBA 21873635
GO:0005829 Component Cytosol TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
138420 4455 ENSG00000167588
Protein
UniProt ID P21695
Protein name Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic (GPD-C) (GPDH-C) (EC 1.1.1.8)
Protein function Has glycerol-3-phosphate dehydrogenase activity.
PDB 1WPQ , 1X0V , 1X0X , 6E8Y , 6E8Z , 6E90 , 6PYP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01210 NAD_Gly3P_dh_N 5 174 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Family
PF07479 NAD_Gly3P_dh_C 193 340 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in liver (at protein level). {ECO:0000269|PubMed:7772607}.
Sequence
Sequence length 349
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Glycerophospholipid metabolism   Synthesis of PA
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Hypercholesterolemia Hypercholesterolemia rs28942111, rs28942112, rs137852912, rs121908025, rs28942082, rs28942083, rs121908028, rs121908030, rs28942079, rs28942084, rs121908032, rs387906302, rs387906303, rs121908033, rs121908034
View all (1161 more)
Multiple congenital anomalies Multiple congenital anomalies rs1057517732 28944580, 22226083, 24549054
Transient hypertriglyceridemia and hepatosteatosis Transient infantile hypertriglyceridemia and hepatosteatosis rs200327418, rs199673455, rs1592303371
Unknown
Disease term Disease name Evidence References Source
Hypertriglyceridemia HYPERTRIGLYCERIDEMIA, TRANSIENT INFANTILE 22226083, 24549054 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Brain Infarction Associate 36529041
Breast Neoplasms Associate 22552268, 34657876, 39684297
Carcinogenesis Associate 39684297
Carcinoma Hepatocellular Associate 22226083, 40500772
Carcinoma Ovarian Epithelial Associate 35563509
Carcinoma Pancreatic Ductal Associate 38366633
Fatty Liver Associate 22226083, 24549054, 33907148
Fatty Liver Alcoholic Associate 35450873
Glyceraldehyde 3 phosphate dehydrogenase deficiency Associate 35450873
Hepatic Adenomas Familial Associate 35365473