Gene Gene information from NCBI Gene database.
Entrez ID 27295
Gene name PDZ and LIM domain 3
Gene symbol PDLIM3
Synonyms (NCBI Gene)
ALP
Chromosome 4
Chromosome location 4q35.1
Summary The protein encoded by this gene contains a PDZ domain and a LIM domain, indicating that it may be involved in cytoskeletal assembly. In support of this, the encoded protein has been shown to bind the spectrin-like repeats of alpha-actinin-2 and to coloca
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs199979457 T>A,C Conflicting-interpretations-of-pathogenicity, benign Intron variant
rs754882710 CT>- Likely-pathogenic Frameshift variant, non coding transcript variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
177
miRTarBase ID miRNA Experiments Reference
MIRT024819 hsa-miR-215-5p Microarray 19074876
MIRT026792 hsa-miR-192-5p Microarray 19074876
MIRT677469 hsa-miR-6813-3p HITS-CLIP 23824327
MIRT677468 hsa-miR-1224-3p HITS-CLIP 23824327
MIRT677467 hsa-miR-3653-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0001725 Component Stress fiber IBA
GO:0003779 Function Actin binding IBA
GO:0005515 Function Protein binding IPI 23414517, 25416956, 25910212, 31515488
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605889 20767 ENSG00000154553
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q53GG5
Protein name PDZ and LIM domain protein 3 (Actinin-associated LIM protein) (Alpha-actinin-2-associated LIM protein)
Protein function May play a role in the organization of actin filament arrays within muscle cells.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00595 PDZ 3 81 PDZ domain Domain
PF15936 DUF4749 184 272 Domain of unknown function (DUF4749) Family
PF00412 LIM 294 349 LIM domain Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is highly expressed in differentiated skeletal muscle. Isoform 2 is heart-specific. {ECO:0000269|PubMed:9334352}.
Sequence
Sequence length 364
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytoskeleton in muscle cells  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
657
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cardiomyopathy Likely benign rs143121072 RCV000852987
Cardiovascular phenotype Uncertain significance; Benign; Likely benign; Conflicting classifications of pathogenicity rs143812960, rs11944325, rs62347360, rs1034968896, rs201185673 RCV000619134
RCV000621333
RCV000620242
RCV000620687
RCV000619173
Familial cardiomyopathy Conflicting classifications of pathogenicity rs142143310 RCV000509295
Hypertrophic cardiomyopathy Likely benign; Uncertain significance; Benign; Conflicting classifications of pathogenicity rs148518020, rs1561187562, rs773342819, rs770996211, rs146092339, rs373419233, rs748290083, rs769389710, rs144286715, rs1259450618, rs764788096, rs2153340587, rs766386102, rs376278294, rs369891118
View all (262 more)
RCV001326058
RCV001326029
RCV001316293
RCV001325423
RCV001339712
RCV001340359
RCV001347263
RCV001349047
RCV001370954
RCV001365977
RCV001360308
RCV001374365
RCV001408143
RCV001418425
RCV001438459
RCV001441913
RCV001443429
RCV001476806
RCV001451552
RCV001472700
RCV001489840
RCV001488336
RCV001481765
RCV001495455
RCV001515416
RCV002073360
RCV001989556
RCV001990528
RCV002015023
RCV001970680
RCV001865046
RCV001905302
RCV001975738
RCV001947527
RCV001947150
RCV001944597
RCV001930095
RCV001901035
RCV001867669
RCV001937978
RCV000203796
RCV000464207
RCV002055744
RCV000463435
RCV000230401
RCV000226957
RCV002055745
RCV001509666
RCV000467604
RCV001922479
RCV001915079
RCV001985728
RCV001983727
RCV001983796
RCV002003007
RCV001872927
RCV001899584
RCV002005723
RCV002003355
RCV002045982
RCV001880952
RCV001875561
RCV001935203
RCV001927918
RCV001921947
RCV001910196
RCV001988550
RCV002041017
RCV001981073
RCV002101878
RCV002103384
RCV002106602
RCV002071641
RCV002129364
RCV002181426
RCV002151517
RCV002083117
RCV002209668
RCV002195561
RCV002173507
RCV002100681
RCV002211501
RCV002193540
RCV002111510
RCV002090780
RCV002088776
RCV002301651
RCV002304290
RCV003764992
RCV003775691
RCV003776018
RCV003775956
RCV003103375
RCV003099904
RCV005227702
RCV005215868
RCV005227707
RCV005227666
RCV003776402
RCV005227705
RCV003774190
RCV005215869
RCV003095247
RCV003775145
RCV005227756
RCV003066703
RCV003066960
RCV003085319
RCV003069010
RCV003085860
RCV003091283
RCV002610388
RCV002584935
RCV002599656
RCV002611211
RCV002628041
RCV002611046
RCV002633475
RCV002654534
RCV002651344
RCV002629791
RCV002651870
RCV001485614
RCV002583229
RCV001062027
RCV000629183
RCV000629178
RCV001082207
RCV000229952
RCV000227177
RCV000456516
RCV001364044
RCV002671641
RCV002667540
RCV002642742
RCV002700141
RCV002710941
RCV002711138
RCV002791989
RCV002880775
RCV002880896
RCV002863822
RCV002895711
RCV002886530
RCV002938644
RCV002957335
RCV002966074
RCV002993578
RCV002995442
RCV002994857
RCV003031563
RCV003032342
RCV003038182
RCV003035728
RCV003047982
RCV003048070
RCV001080746
RCV002057135
RCV000629185
RCV000457582
RCV000462391
RCV000234315
RCV000227639
RCV000233406
RCV000229482
RCV003778972
RCV005209600
RCV003777122
RCV003777164
RCV003778112
RCV003785901
RCV003785904
RCV003786316
RCV003781911
RCV003781966
RCV003784650
RCV003783182
RCV003783363
RCV003789984
RCV003793279
RCV003788625
RCV003780833
RCV003780841
RCV003788926
RCV003788953
RCV003789007
RCV003789362
RCV003787807
RCV003786229
RCV003788234
RCV003786558
RCV003786699
RCV003792612
RCV003793880
RCV003806228
RCV003791379
RCV003798983
RCV003803230
RCV003800916
RCV003797296
RCV003795157
RCV003800171
RCV003800490
RCV003800808
RCV003808780
RCV003807120
RCV003807473
RCV003812761
RCV003812843
RCV003812900
RCV002521807
RCV000560811
RCV002061461
RCV001861607
RCV000476923
RCV000866034
RCV000468238
RCV000463646
RCV001415265
RCV000467359
RCV001408576
RCV000459101
RCV001313161
RCV001082000
RCV000232736
RCV000629177
RCV002526986
RCV002527631
RCV001223260
RCV001857949
RCV000534728
RCV000545931
RCV000548484
RCV000557125
RCV000535572
RCV000526883
RCV001860283
RCV003767757
RCV005223045
RCV001479446
RCV002066701
RCV003767817
RCV000629182
RCV000629180
RCV000629181
RCV000629184
RCV000629179
RCV000702610
RCV000699853
RCV000697320
RCV000695472
RCV001869178
RCV000796336
RCV000793921
RCV000816311
RCV000820830
RCV000801158
RCV000797377
RCV000795072
RCV000822478
RCV000863861
RCV000869474
RCV000877295
RCV001510758
RCV000871553
RCV001400160
RCV000892229
RCV000921451
RCV001406021
RCV001447503
RCV001476519
RCV001065414
RCV001048479
RCV001046967
RCV001043875
RCV001040307
RCV001060524
RCV001065995
RCV001037511
RCV001070340
RCV001036368
RCV001216557
RCV001201563
RCV001208426
RCV001234012
RCV001231601
RCV001230247
RCV001234833
RCV001227246
RCV001226455
RCV001246970
RCV001243364
RCV001242659
RCV001247378
RCV001302130
RCV001296493
RCV001308782
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Carcinogenesis Associate 36813922
Carcinoma Hepatocellular Associate 36177006
Cardiomyopathy Dilated Associate 31424159, 35647201
Colorectal Neoplasms Associate 35991839
Endometriosis Stimulate 35378934
Endometriosis Associate 36339397
Medulloblastoma Associate 36813922
Muscular Dystrophies Associate 35647201
Muscular Dystrophy Facioscapulohumeral Associate 19888305
Neoplasms Associate 35647201, 35991839, 36813922