Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
27295
Gene name Gene Name - the full gene name approved by the HGNC.
PDZ and LIM domain 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PDLIM3
Synonyms (NCBI Gene) Gene synonyms aliases
ALP
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q35.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene contains a PDZ domain and a LIM domain, indicating that it may be involved in cytoskeletal assembly. In support of this, the encoded protein has been shown to bind the spectrin-like repeats of alpha-actinin-2 and to coloca
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs199979457 T>A,C Conflicting-interpretations-of-pathogenicity, benign Intron variant
rs754882710 CT>- Likely-pathogenic Frameshift variant, non coding transcript variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT024819 hsa-miR-215-5p Microarray 19074876
MIRT026792 hsa-miR-192-5p Microarray 19074876
MIRT677469 hsa-miR-6813-3p HITS-CLIP 23824327
MIRT677468 hsa-miR-1224-3p HITS-CLIP 23824327
MIRT677467 hsa-miR-3653-5p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001725 Component Stress fiber IBA 21873635
GO:0003779 Function Actin binding IBA 21873635
GO:0005515 Function Protein binding IPI 23414517, 25416956, 31515488
GO:0005829 Component Cytosol IDA
GO:0005912 Component Adherens junction IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605889 20767 ENSG00000154553
Protein
UniProt ID Q53GG5
Protein name PDZ and LIM domain protein 3 (Actinin-associated LIM protein) (Alpha-actinin-2-associated LIM protein)
Protein function May play a role in the organization of actin filament arrays within muscle cells.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00595 PDZ 3 81 PDZ domain Domain
PF15936 DUF4749 184 272 Domain of unknown function (DUF4749) Family
PF00412 LIM 294 349 LIM domain Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is highly expressed in differentiated skeletal muscle. Isoform 2 is heart-specific. {ECO:0000269|PubMed:9334352}.
Sequence
Sequence length 364
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Cytoskeleton in muscle cells  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cardiomyopathy Cardiomyopathies rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
Hypertrophic cardiomyopathy Hypertrophic Cardiomyopathy rs63750743, rs104894655, rs121908987, rs587776643, rs28938173, rs121908989, rs121908991, rs267606977, rs267606978, rs193922384, rs121909374, rs886041030, rs886041031, rs121909375, rs121909377
View all (752 more)
20801532, 9334352
Unknown
Disease term Disease name Evidence References Source
Myopathy dilated cardiomyopathy GenCC
Associations from Text Mining
Disease Name Relationship Type References
Carcinogenesis Associate 36813922
Carcinoma Hepatocellular Associate 36177006
Cardiomyopathy Dilated Associate 31424159, 35647201
Colorectal Neoplasms Associate 35991839
Endometriosis Stimulate 35378934
Endometriosis Associate 36339397
Medulloblastoma Associate 36813922
Muscular Dystrophies Associate 35647201
Muscular Dystrophy Facioscapulohumeral Associate 19888305
Neoplasms Associate 35647201, 35991839, 36813922