Gene Gene information from NCBI Gene database.
Entrez ID 27245
Gene name AT-hook DNA binding motif containing 1
Gene symbol AHDC1
Synonyms (NCBI Gene)
MRD25XIGIS
Chromosome 1
Chromosome location 1p36.11-p35.3
Summary This gene encodes a protein containing two AT-hooks, which likely function in DNA binding. Mutations in this gene were found in individuals with Xia-Gibbs syndrome. [provided by RefSeq, Jun 2014]
SNPs SNP information provided by dbSNP.
54
SNP ID Visualize variation Clinical significance Consequence
rs587779766 CA>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs587779767 G>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs587779768 G>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs749294057 G>-,GG Pathogenic Frameshift variant, coding sequence variant, non coding transcript variant
rs777736953 G>A Likely-pathogenic, pathogenic Coding sequence variant, stop gained, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
151
miRTarBase ID miRNA Experiments Reference
MIRT041779 hsa-miR-484 CLASH 23622248
MIRT041200 hsa-miR-193b-3p CLASH 23622248
MIRT728370 hsa-miR-19a-3p HITS-CLIP 22473208
MIRT728369 hsa-miR-19b-3p HITS-CLIP 22473208
MIRT773561 hsa-miR-1206 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
13
GO ID Ontology Definition Evidence Reference
GO:0001707 Process Mesoderm formation IDA 35585237
GO:0001707 Process Mesoderm formation IEA
GO:0003677 Function DNA binding IEA
GO:0003700 Function DNA-binding transcription factor activity IDA 35585237
GO:0005515 Function Protein binding IPI 16713569, 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615790 25230 ENSG00000126705
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q5TGY3
Protein name Transcription factor Gibbin (AT-hook DNA-binding motif-containing protein 1)
Protein function Transcription factor required for the proper patterning of the epidermis, which plays a key role in early epithelial morphogenesis (PubMed:35585237). Directly binds promoter and enhancer regions and acts by maintaining local enhancer-promoter ch
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15735 DUF4683 562 642 Domain of unknown function (DUF4683) Family
Sequence
MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHAFSEN
PRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDNGRVNLRP
VVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSP
EERATPHAKSERPSHPLYEPEPEPRDSPQPGQGHSPGATAAATGLPPEPEPDSTDYSELA
DADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLDPQPRFLDPQALEPLGEALELPPL
QPLADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLA
EPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADAGPEGRLLPLPMPT
GLVAALAEPPPPPPPPPPALPGPGPVSVPELKPESSQTPVVSTRKGKCRGVRRMVVKMAK
IPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSAEPTPLLKMKNNGRNVVVVFPPGEMP
IILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATMAMPEVKKRRRRKQKLASPQPS
YAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSE
PESVHQAPDTQSISHFLH
RVQGFRRRGGKAGGFGGRGGGHAAKSARCSFSDFFEGIGKKKKVVAVAAAGVGGPGLTEL
GHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHH
GHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYSTGAPSGQTELSQERQNLFTGYF
RSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAV
GSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTT
HPPANTYLPQYGGYGAGQSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGY
APPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATS
AASAASSSSSSFQPSPENCRQFAGASQWPFRQGYGGLDWASEAFSQLYNPSFDCHVSEPN
VILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSS
LEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFPTSASAAASGY
PSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGD
SSMSPLPSQSRAFGVGERDPCDFIGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHF
PPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLGHAAAA
QAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGTGLLADFLGRTEAACL
SAPHLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQ
DTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL
Sequence length 1603
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
448
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abdominal obesity-metabolic syndrome 3 Likely pathogenic; Pathogenic rs777736953 RCV000590880
AHDC1-related disorder Likely pathogenic; Pathogenic rs749294057, rs2521944324 RCV003420560
RCV003410574
AHDC1-related intellectual disability - obstructive sleep apnea - mild dysmorphism syndrome Pathogenic; Likely pathogenic rs2148289299, rs2148277610, rs2148283415, rs2148285877, rs1064797043, rs2148281776, rs587779766, rs587779767, rs587779768, rs2148263628, rs2148266336, rs2148275240, rs2148288765, rs2148276974, rs2521899841
View all (63 more)
RCV001354044
RCV001374407
RCV001788491
RCV001775216
RCV001775263
RCV001829281
RCV000119838
RCV000119839
RCV000119840
RCV002052237
RCV002211053
RCV002249241
RCV002275375
RCV002302429
RCV002465460
RCV002468838
RCV001563700
RCV001563688
RCV004767157
RCV002789983
RCV003128002
RCV003152875
RCV000256460
RCV001563687
RCV001563695
RCV001563693
RCV003314338
RCV003334447
RCV003335986
RCV003337710
RCV003348537
RCV003348539
RCV003348540
RCV003348541
RCV003883304
RCV003883326
RCV003989442
RCV003991514
RCV003992034
RCV004547349
RCV004557239
RCV000496162
RCV000505191
RCV001563684
RCV000578263
RCV001331484
RCV000590909
RCV000844951
RCV000844950
RCV001563697
RCV000660414
RCV000677394
RCV000677417
RCV001563698
RCV000779650
RCV000790983
RCV000824990
RCV000984972
RCV000986286
RCV000995693
RCV001007944
RCV001027686
RCV001251889
RCV001252958
RCV001263210
RCV001263211
RCV001261553
RCV002290671
RCV001269392
RCV001563702
RCV001563701
RCV001563699
RCV001563696
RCV001563694
RCV001563692
RCV001563691
RCV001563690
RCV001563689
RCV001563686
RCV001563683
RCV001563682
Cerebellar vermis hypoplasia Likely pathogenic; Pathogenic rs1557667078 RCV000779650
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs138778676 RCV005903409
Adrenocortical carcinoma, hereditary Benign rs113173951, rs112583157 RCV005909573
RCV005914420
Autism spectrum disorder Likely benign rs2019499698 RCV003128011
Cervical cancer Benign; Likely benign rs112583157, rs950217952 RCV005914421
RCV005899712
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Carcinoma Pancreatic Ductal Associate 34313325
Chronic Kidney Disease Mineral and Bone Disorder Associate 31085678
Craniosynostoses Associate 27884935
Developmental Disabilities Associate 35636160
Dwarfism Pituitary Associate 30729726
Epilepsy Associate 35636160
Gardner Syndrome Associate 36054313
Genetic Diseases Inborn Associate 24791903
Hypersensitivity Delayed Associate 33644933
Intellectual Disability Associate 31085678