Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
27245
Gene name Gene Name - the full gene name approved by the HGNC.
AT-hook DNA binding motif containing 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
AHDC1
Synonyms (NCBI Gene) Gene synonyms aliases
MRD25, XIGIS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
XIGIS
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p36.11-p35.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein containing two AT-hooks, which likely function in DNA binding. Mutations in this gene were found in individuals with Xia-Gibbs syndrome. [provided by RefSeq, Jun 2014]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs587779766 CA>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs587779767 G>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs587779768 G>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs749294057 G>-,GG Pathogenic Frameshift variant, coding sequence variant, non coding transcript variant
rs777736953 G>A Likely-pathogenic, pathogenic Coding sequence variant, stop gained, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT041779 hsa-miR-484 CLASH 23622248
MIRT041200 hsa-miR-193b-3p CLASH 23622248
MIRT728370 hsa-miR-19a-3p HITS-CLIP 22473208
MIRT728369 hsa-miR-19b-3p HITS-CLIP 22473208
MIRT773561 hsa-miR-1206 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003677 Function DNA binding IEA
GO:0005515 Function Protein binding IPI 16713569, 32814053
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
615790 25230 ENSG00000126705
Protein
UniProt ID Q5TGY3
Protein name Transcription factor Gibbin (AT-hook DNA-binding motif-containing protein 1)
Protein function Transcription factor required for the proper patterning of the epidermis, which plays a key role in early epithelial morphogenesis (PubMed:35585237). Directly binds promoter and enhancer regions and acts by maintaining local enhancer-promoter ch
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15735 DUF4683 562 642 Domain of unknown function (DUF4683) Family
Sequence
MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHAFSEN
PRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDNGRVNLRP
VVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSP
EERATPHAKSERPSHPLYEPEPEPRDSPQPGQGHSPGATAAATGLPPEPEPDSTDYSELA
DADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLDPQPRFLDPQALEPLGEALELPPL
QPLADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLA
EPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADAGPEGRLLPLPMPT
GLVAALAEPPPPPPPPPPALPGPGPVSVPELKPESSQTPVVSTRKGKCRGVRRMVVKMAK
IPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSAEPTPLLKMKNNGRNVVVVFPPGEMP
IILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATMAMPEVKKRRRRKQKLASPQPS
YAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSE
PESVHQAPDTQSISHFLH
RVQGFRRRGGKAGGFGGRGGGHAAKSARCSFSDFFEGIGKKKKVVAVAAAGVGGPGLTEL
GHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHH
GHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYSTGAPSGQTELSQERQNLFTGYF
RSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAV
GSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTT
HPPANTYLPQYGGYGAGQSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGY
APPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATS
AASAASSSSSSFQPSPENCRQFAGASQWPFRQGYGGLDWASEAFSQLYNPSFDCHVSEPN
VILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSS
LEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFPTSASAAASGY
PSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGD
SSMSPLPSQSRAFGVGERDPCDFIGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHF
PPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLGHAAAA
QAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGTGLLADFLGRTEAACL
SAPHLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQ
DTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL
Sequence length 1603
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Metabolic syndrome ABDOMINAL OBESITY-METABOLIC SYNDROME 3 rs367643250, rs587777380, rs777736953
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
24791903
Mental retardation Severe intellectual disability, Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Hypotonia Neonatal Hypotonia rs141138948, rs397517172, rs869312824, rs1583169151 24791903
Unknown
Disease term Disease name Evidence References Source
Coronary artery disease Coronary artery disease GWAS
Psoriasis Psoriasis GWAS
Myocardial Infarction Myocardial Infarction GWAS
Associations from Text Mining
Disease Name Relationship Type References
Carcinoma Pancreatic Ductal Associate 34313325
Chronic Kidney Disease Mineral and Bone Disorder Associate 31085678
Craniosynostoses Associate 27884935
Developmental Disabilities Associate 35636160
Dwarfism Pituitary Associate 30729726
Epilepsy Associate 35636160
Gardner Syndrome Associate 36054313
Genetic Diseases Inborn Associate 24791903
Hypersensitivity Delayed Associate 33644933
Intellectual Disability Associate 31085678