Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
27229
Gene name Gene Name - the full gene name approved by the HGNC.
Tubulin gamma complex component 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TUBGCP4
Synonyms (NCBI Gene) Gene synonyms aliases
76P, GCP-4, GCP4, Grip76, MCCRP3
Chromosome Chromosome number
15
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
15q15.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a component of the gamma-tubulin ring complex, which is required for microtubule nucleation. In mammalian cells, the protein localizes to centrosomes in association with gamma-tubulin. Crystal structure analysis revealed a structure comp
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs794726855 ->T Pathogenic Frameshift variant, coding sequence variant, non coding transcript variant
rs794726856 T>- Pathogenic Frameshift variant, 5 prime UTR variant, coding sequence variant, non coding transcript variant
rs886039671 C>AA Pathogenic Frameshift variant, coding sequence variant, non coding transcript variant
rs1555394706 AG>T Likely-pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
rs1555396535 C>A Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT030219 hsa-miR-26b-5p Microarray 19088304
MIRT050266 hsa-miR-25-3p CLASH 23622248
MIRT042176 hsa-miR-484 CLASH 23622248
MIRT525347 hsa-miR-3646 PAR-CLIP 22012620
MIRT525346 hsa-miR-1252-3p PAR-CLIP 22012620
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000226 Process Microtubule cytoskeleton organization IEA
GO:0000278 Process Mitotic cell cycle IBA
GO:0000922 Component Spindle pole IEA
GO:0000930 Component Gamma-tubulin complex IBA
GO:0000931 Component Gamma-tubulin ring complex NAS 10562286
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
609610 16691 ENSG00000137822
Protein
UniProt ID Q9UGJ1
Protein name Gamma-tubulin complex component 4 (GCP-4) (hGCP4) (Gamma-ring complex protein 76 kDa) (h76p) (hGrip76)
Protein function Component of the gamma-tubulin ring complex (gTuRC) which mediates microtubule nucleation (PubMed:38305685, PubMed:38609661, PubMed:39321809). The gTuRC regulates the minus-end nucleation of alpha-beta tubulin heterodimers that grow into microtu
PDB 3RIP , 6V69 , 6V6S , 7AS4 , 7QJ0 , 7QJ1 , 7QJ2 , 7QJ3 , 7QJ4 , 7QJ5 , 7QJ6 , 7QJ7 , 7QJ8 , 7QJ9 , 7QJA , 7QJB , 7QJC , 7QJD , 7QJE , 8Q62 , 8RX1 , 8VRD , 8VRJ , 8VRK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF17681 GCP_N_terminal 2 347 Gamma tubulin complex component N-terminal Domain
PF04130 GCP_C_terminal 350 655 Gamma tubulin complex component C-terminal Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed.
Sequence
Sequence length 667
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Recruitment of mitotic centrosome proteins and complexes
Recruitment of NuMA to mitotic centrosomes
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Microcephaly with Chorioretinopathy Microcephaly and chorioretinopathy 3 rs200092283, rs794726855, rs794726856, rs1595496969 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Optic Atrophy optic atrophy N/A N/A ClinVar
retinal dystrophy Retinal dystrophy N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Amyotrophic Lateral Sclerosis Associate 30886340
Aneuploidy Associate 25817018
Autosomal Recessive Primary Microcephaly Associate 25817018
Carcinoma Hepatocellular Associate 36530949
Chorioretinitis Associate 25817018
Congenital Abnormalities Associate 25817018
Familial Exudative Vitreoretinopathies Associate 33137195
Microcephaly Associate 25817018, 33137195
Microcephaly with Chorioretinopathy Autosomal Dominant Associate 25817018, 33137195
Microphthalmia Syndromic 6 Associate 25817018