Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	27031
Gene name Gene Name - the full gene name approved by the HGNC.	Nephrocystin 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	NPHP3
Synonyms (NCBI Gene) Gene synonyms aliases	CFAP31, MKS7, NPH3, RHPD, RHPD1, SLSN3
Chromosome Chromosome number	3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	3q22.1
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes a protein containing a coiled-coil (CC) domain, a tubulin-tyrosine ligase (TTL) domain, and a tetratrico peptide repeat (TPR) domain. The encoded protein interacts with nephrocystin, it is required for normal ciliary development, and it

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miRTarBase ID	miRNA	Experiments	Reference
MIRT024459	hsa-miR-215-5p	Microarray	19074876
MIRT026854	hsa-miR-192-5p	Microarray	19074876
MIRT641132	hsa-miR-4781-3p	HITS-CLIP	23824327
MIRT641131	hsa-miR-221-5p	HITS-CLIP	23824327
MIRT641130	hsa-miR-8073	HITS-CLIP	23824327
MIRT641129	hsa-miR-519d-5p	HITS-CLIP	23824327
MIRT641128	hsa-miR-5695	HITS-CLIP	23824327
MIRT641127	hsa-miR-3176	HITS-CLIP	23824327
MIRT641126	hsa-miR-3922-3p	HITS-CLIP	23824327
MIRT641125	hsa-miR-3663-5p	HITS-CLIP	23824327
MIRT641124	hsa-miR-4755-3p	HITS-CLIP	23824327
MIRT641123	hsa-miR-6131	HITS-CLIP	23824327
MIRT641122	hsa-miR-4757-5p	HITS-CLIP	23824327
MIRT641121	hsa-miR-6744-3p	HITS-CLIP	23824327
MIRT641120	hsa-miR-515-5p	HITS-CLIP	23824327
MIRT641119	hsa-miR-519e-5p	HITS-CLIP	23824327
MIRT641118	hsa-miR-548s	HITS-CLIP	23824327
MIRT641117	hsa-miR-4701-5p	HITS-CLIP	23824327
MIRT641116	hsa-miR-588	HITS-CLIP	23824327
MIRT641115	hsa-miR-4435	HITS-CLIP	23824327
MIRT641114	hsa-miR-3187-3p	HITS-CLIP	23824327
MIRT641113	hsa-miR-6878-3p	HITS-CLIP	23824327
MIRT641112	hsa-miR-6843-3p	HITS-CLIP	23824327
MIRT641111	hsa-miR-6848-3p	HITS-CLIP	23824327
MIRT499675	hsa-miR-3925-5p	PAR-CLIP	24398324
MIRT499674	hsa-miR-3123	PAR-CLIP	24398324
MIRT499673	hsa-miR-3927-3p	PAR-CLIP	24398324
MIRT499672	hsa-miR-6831-5p	PAR-CLIP	24398324
MIRT499671	hsa-miR-3121-5p	PAR-CLIP	24398324
MIRT499670	hsa-miR-3124-3p	PAR-CLIP	24398324
MIRT499668	hsa-miR-4640-5p	PAR-CLIP	24398324
MIRT499669	hsa-miR-4726-5p	PAR-CLIP	24398324
MIRT499667	hsa-miR-6508-3p	PAR-CLIP	24398324
MIRT499666	hsa-miR-4451	PAR-CLIP	24398324
MIRT499665	hsa-miR-6832-5p	PAR-CLIP	24398324
MIRT499664	hsa-miR-6724-5p	PAR-CLIP	24398324
MIRT499663	hsa-miR-6773-5p	PAR-CLIP	24398324
MIRT450015	hsa-miR-6757-3p	PAR-CLIP	22100165
MIRT450014	hsa-miR-3117-5p	PAR-CLIP	22100165
MIRT450013	hsa-miR-514a-3p	PAR-CLIP	22100165
MIRT450012	hsa-miR-514b-3p	PAR-CLIP	22100165
MIRT641132	hsa-miR-4781-3p	HITS-CLIP	23824327
MIRT641131	hsa-miR-221-5p	HITS-CLIP	23824327
MIRT641130	hsa-miR-8073	HITS-CLIP	23824327
MIRT641129	hsa-miR-519d-5p	HITS-CLIP	23824327
MIRT641128	hsa-miR-5695	HITS-CLIP	23824327
MIRT641127	hsa-miR-3176	HITS-CLIP	23824327
MIRT641126	hsa-miR-3922-3p	HITS-CLIP	23824327
MIRT641125	hsa-miR-3663-5p	HITS-CLIP	23824327
MIRT641124	hsa-miR-4755-3p	HITS-CLIP	23824327
MIRT641123	hsa-miR-6131	HITS-CLIP	23824327
MIRT641122	hsa-miR-4757-5p	HITS-CLIP	23824327
MIRT641121	hsa-miR-6744-3p	HITS-CLIP	23824327
MIRT641120	hsa-miR-515-5p	HITS-CLIP	23824327
MIRT641119	hsa-miR-519e-5p	HITS-CLIP	23824327
MIRT641118	hsa-miR-548s	HITS-CLIP	23824327
MIRT641117	hsa-miR-4701-5p	HITS-CLIP	23824327
MIRT641116	hsa-miR-588	HITS-CLIP	23824327
MIRT641115	hsa-miR-4435	HITS-CLIP	23824327
MIRT641114	hsa-miR-3187-3p	HITS-CLIP	23824327
MIRT641113	hsa-miR-6878-3p	HITS-CLIP	23824327
MIRT641112	hsa-miR-6843-3p	HITS-CLIP	23824327
MIRT641111	hsa-miR-6848-3p	HITS-CLIP	23824327
MIRT499675	hsa-miR-3925-5p	PAR-CLIP	24398324
MIRT499674	hsa-miR-3123	PAR-CLIP	24398324
MIRT499673	hsa-miR-3927-3p	PAR-CLIP	24398324
MIRT499672	hsa-miR-6831-5p	PAR-CLIP	24398324
MIRT499671	hsa-miR-3121-5p	PAR-CLIP	24398324
MIRT499670	hsa-miR-3124-3p	PAR-CLIP	24398324
MIRT499668	hsa-miR-4640-5p	PAR-CLIP	24398324
MIRT499669	hsa-miR-4726-5p	PAR-CLIP	24398324
MIRT499667	hsa-miR-6508-3p	PAR-CLIP	24398324
MIRT499666	hsa-miR-4451	PAR-CLIP	24398324
MIRT499665	hsa-miR-6832-5p	PAR-CLIP	24398324
MIRT499664	hsa-miR-6724-5p	PAR-CLIP	24398324
MIRT499663	hsa-miR-6773-5p	PAR-CLIP	24398324
MIRT450015	hsa-miR-6757-3p	PAR-CLIP	22100165
MIRT450014	hsa-miR-3117-5p	PAR-CLIP	22100165
MIRT450013	hsa-miR-514a-3p	PAR-CLIP	22100165
MIRT450012	hsa-miR-514b-3p	PAR-CLIP	22100165
MIRT1190702	hsa-let-7a	CLIP-seq
MIRT1190703	hsa-let-7b	CLIP-seq
MIRT1190704	hsa-let-7c	CLIP-seq
MIRT1190705	hsa-let-7d	CLIP-seq
MIRT1190706	hsa-let-7e	CLIP-seq
MIRT1190707	hsa-let-7f	CLIP-seq
MIRT1190708	hsa-let-7g	CLIP-seq
MIRT1190709	hsa-let-7i	CLIP-seq
MIRT1190710	hsa-miR-103a	CLIP-seq
MIRT1190711	hsa-miR-106a	CLIP-seq
MIRT1190712	hsa-miR-106b	CLIP-seq
MIRT1190713	hsa-miR-107	CLIP-seq
MIRT1190714	hsa-miR-1252	CLIP-seq
MIRT1190715	hsa-miR-1258	CLIP-seq
MIRT1190716	hsa-miR-1261	CLIP-seq
MIRT1190717	hsa-miR-1295	CLIP-seq
MIRT1190718	hsa-miR-129-5p	CLIP-seq
MIRT1190719	hsa-miR-1304	CLIP-seq
MIRT1190720	hsa-miR-17	CLIP-seq
MIRT1190721	hsa-miR-186	CLIP-seq
MIRT1190722	hsa-miR-197	CLIP-seq
MIRT1190723	hsa-miR-202	CLIP-seq
MIRT1190724	hsa-miR-20a	CLIP-seq
MIRT1190725	hsa-miR-20b	CLIP-seq
MIRT1190726	hsa-miR-31	CLIP-seq
MIRT1190727	hsa-miR-3125	CLIP-seq
MIRT1190728	hsa-miR-3133	CLIP-seq
MIRT1190729	hsa-miR-3149	CLIP-seq
MIRT1190730	hsa-miR-3189-3p	CLIP-seq
MIRT1190731	hsa-miR-323b-3p	CLIP-seq
MIRT1190732	hsa-miR-3609	CLIP-seq
MIRT1190733	hsa-miR-3618	CLIP-seq
MIRT1190734	hsa-miR-362-5p	CLIP-seq
MIRT1190735	hsa-miR-3646	CLIP-seq
MIRT1190736	hsa-miR-3653	CLIP-seq
MIRT1190737	hsa-miR-374a	CLIP-seq
MIRT1190738	hsa-miR-374b	CLIP-seq
MIRT1190739	hsa-miR-380	CLIP-seq
MIRT1190740	hsa-miR-3916	CLIP-seq
MIRT1190741	hsa-miR-3927	CLIP-seq
MIRT1190742	hsa-miR-3944-5p	CLIP-seq
MIRT1190743	hsa-miR-411	CLIP-seq
MIRT1190744	hsa-miR-4267	CLIP-seq
MIRT1190745	hsa-miR-4268	CLIP-seq
MIRT1190746	hsa-miR-4270	CLIP-seq
MIRT1190747	hsa-miR-4274	CLIP-seq
MIRT1190748	hsa-miR-4320	CLIP-seq
MIRT1190749	hsa-miR-433	CLIP-seq
MIRT1190750	hsa-miR-4428	CLIP-seq
MIRT1190751	hsa-miR-4441	CLIP-seq
MIRT1190752	hsa-miR-4448	CLIP-seq
MIRT1190753	hsa-miR-4458	CLIP-seq
MIRT1190754	hsa-miR-4474-3p	CLIP-seq
MIRT1190755	hsa-miR-4500	CLIP-seq
MIRT1190756	hsa-miR-4519	CLIP-seq
MIRT1190757	hsa-miR-451b	CLIP-seq
MIRT1190758	hsa-miR-4529-5p	CLIP-seq
MIRT1190759	hsa-miR-4661-3p	CLIP-seq
MIRT1190760	hsa-miR-4666-5p	CLIP-seq
MIRT1190761	hsa-miR-4708-3p	CLIP-seq
MIRT1190762	hsa-miR-4709-3p	CLIP-seq
MIRT1190763	hsa-miR-4711-3p	CLIP-seq
MIRT1190764	hsa-miR-4716-5p	CLIP-seq
MIRT1190765	hsa-miR-4717-5p	CLIP-seq
MIRT1190766	hsa-miR-4733-3p	CLIP-seq
MIRT1190767	hsa-miR-4735-5p	CLIP-seq
MIRT1190768	hsa-miR-4775	CLIP-seq
MIRT1190769	hsa-miR-4778-3p	CLIP-seq
MIRT1190770	hsa-miR-4796-3p	CLIP-seq
MIRT1190771	hsa-miR-485-3p	CLIP-seq
MIRT1190772	hsa-miR-500b	CLIP-seq
MIRT1190773	hsa-miR-5096	CLIP-seq
MIRT1190774	hsa-miR-519a	CLIP-seq
MIRT1190775	hsa-miR-519b-3p	CLIP-seq
MIRT1190776	hsa-miR-519c-3p	CLIP-seq
MIRT1190777	hsa-miR-519d	CLIP-seq
MIRT1190778	hsa-miR-548a-5p	CLIP-seq
MIRT1190779	hsa-miR-548ab	CLIP-seq
MIRT1190780	hsa-miR-548ag	CLIP-seq
MIRT1190781	hsa-miR-548ah	CLIP-seq
MIRT1190782	hsa-miR-548ai	CLIP-seq
MIRT1190783	hsa-miR-548ak	CLIP-seq
MIRT1190784	hsa-miR-548b-5p	CLIP-seq
MIRT1190785	hsa-miR-548c-5p	CLIP-seq
MIRT1190786	hsa-miR-548d-5p	CLIP-seq
MIRT1190787	hsa-miR-548h	CLIP-seq
MIRT1190788	hsa-miR-548i	CLIP-seq
MIRT1190789	hsa-miR-548j	CLIP-seq
MIRT1190790	hsa-miR-548k	CLIP-seq
MIRT1190791	hsa-miR-548l	CLIP-seq
MIRT1190792	hsa-miR-548m	CLIP-seq
MIRT1190793	hsa-miR-548w	CLIP-seq
MIRT1190794	hsa-miR-548y	CLIP-seq
MIRT1190795	hsa-miR-559	CLIP-seq
MIRT1190796	hsa-miR-562	CLIP-seq
MIRT1190797	hsa-miR-576-5p	CLIP-seq
MIRT1190798	hsa-miR-577	CLIP-seq
MIRT1190799	hsa-miR-578	CLIP-seq
MIRT1190800	hsa-miR-581	CLIP-seq
MIRT1190801	hsa-miR-590-3p	CLIP-seq
MIRT1190802	hsa-miR-595	CLIP-seq
MIRT1190803	hsa-miR-644	CLIP-seq
MIRT1190804	hsa-miR-651	CLIP-seq
MIRT1190805	hsa-miR-758	CLIP-seq
MIRT1190806	hsa-miR-93	CLIP-seq
MIRT1190807	hsa-miR-934	CLIP-seq
MIRT1190808	hsa-miR-98	CLIP-seq
MIRT1190710	hsa-miR-103a	CLIP-seq
MIRT1190713	hsa-miR-107	CLIP-seq
MIRT1190719	hsa-miR-1304	CLIP-seq
MIRT2055224	hsa-miR-134	CLIP-seq
MIRT2055225	hsa-miR-3118	CLIP-seq
MIRT2055226	hsa-miR-3164	CLIP-seq
MIRT1190742	hsa-miR-3944-5p	CLIP-seq
MIRT1190746	hsa-miR-4270	CLIP-seq
MIRT1190748	hsa-miR-4320	CLIP-seq
MIRT2055227	hsa-miR-4420	CLIP-seq
MIRT2055228	hsa-miR-4438	CLIP-seq
MIRT1190751	hsa-miR-4441	CLIP-seq
MIRT1190770	hsa-miR-4796-3p	CLIP-seq
MIRT2055229	hsa-miR-5095	CLIP-seq
MIRT1190799	hsa-miR-578	CLIP-seq
MIRT1190800	hsa-miR-581	CLIP-seq
MIRT1190805	hsa-miR-758	CLIP-seq
MIRT1190710	hsa-miR-103a	CLIP-seq
MIRT1190711	hsa-miR-106a	CLIP-seq
MIRT1190712	hsa-miR-106b	CLIP-seq
MIRT1190713	hsa-miR-107	CLIP-seq
MIRT2284174	hsa-miR-1200	CLIP-seq
MIRT1190718	hsa-miR-129-5p	CLIP-seq
MIRT1190719	hsa-miR-1304	CLIP-seq
MIRT2055224	hsa-miR-134	CLIP-seq
MIRT1190720	hsa-miR-17	CLIP-seq
MIRT1190721	hsa-miR-186	CLIP-seq
MIRT1190722	hsa-miR-197	CLIP-seq
MIRT1190724	hsa-miR-20a	CLIP-seq
MIRT1190725	hsa-miR-20b	CLIP-seq
MIRT2055225	hsa-miR-3118	CLIP-seq
MIRT1190729	hsa-miR-3149	CLIP-seq
MIRT2284175	hsa-miR-3159	CLIP-seq
MIRT2055226	hsa-miR-3164	CLIP-seq
MIRT1190732	hsa-miR-3609	CLIP-seq
MIRT1190742	hsa-miR-3944-5p	CLIP-seq
MIRT1190743	hsa-miR-411	CLIP-seq
MIRT1190744	hsa-miR-4267	CLIP-seq
MIRT1190746	hsa-miR-4270	CLIP-seq
MIRT1190748	hsa-miR-4320	CLIP-seq
MIRT2284176	hsa-miR-4324	CLIP-seq
MIRT1190749	hsa-miR-433	CLIP-seq
MIRT2055227	hsa-miR-4420	CLIP-seq
MIRT2055228	hsa-miR-4438	CLIP-seq
MIRT1190751	hsa-miR-4441	CLIP-seq
MIRT2284177	hsa-miR-4663	CLIP-seq
MIRT2284178	hsa-miR-4682	CLIP-seq
MIRT1190764	hsa-miR-4716-5p	CLIP-seq
MIRT1190766	hsa-miR-4733-3p	CLIP-seq
MIRT1190767	hsa-miR-4735-5p	CLIP-seq
MIRT1190768	hsa-miR-4775	CLIP-seq
MIRT2284179	hsa-miR-4787-3p	CLIP-seq
MIRT1190770	hsa-miR-4796-3p	CLIP-seq
MIRT2284180	hsa-miR-491-3p	CLIP-seq
MIRT2284181	hsa-miR-498	CLIP-seq
MIRT2055229	hsa-miR-5095	CLIP-seq
MIRT1190773	hsa-miR-5096	CLIP-seq
MIRT1190774	hsa-miR-519a	CLIP-seq
MIRT1190775	hsa-miR-519b-3p	CLIP-seq
MIRT1190776	hsa-miR-519c-3p	CLIP-seq
MIRT1190777	hsa-miR-519d	CLIP-seq
MIRT2284182	hsa-miR-544b	CLIP-seq
MIRT1190781	hsa-miR-548ah	CLIP-seq
MIRT2284183	hsa-miR-572	CLIP-seq
MIRT1190799	hsa-miR-578	CLIP-seq
MIRT1190800	hsa-miR-581	CLIP-seq
MIRT1190801	hsa-miR-590-3p	CLIP-seq
MIRT2284184	hsa-miR-628-5p	CLIP-seq
MIRT1190805	hsa-miR-758	CLIP-seq
MIRT1190806	hsa-miR-93	CLIP-seq
MIRT1190702	hsa-let-7a	CLIP-seq
MIRT1190703	hsa-let-7b	CLIP-seq
MIRT1190704	hsa-let-7c	CLIP-seq
MIRT1190705	hsa-let-7d	CLIP-seq
MIRT1190706	hsa-let-7e	CLIP-seq
MIRT1190707	hsa-let-7f	CLIP-seq
MIRT1190708	hsa-let-7g	CLIP-seq
MIRT1190709	hsa-let-7i	CLIP-seq
MIRT2582242	hsa-miR-103b	CLIP-seq
MIRT2284174	hsa-miR-1200	CLIP-seq
MIRT1190718	hsa-miR-129-5p	CLIP-seq
MIRT1190719	hsa-miR-1304	CLIP-seq
MIRT1190721	hsa-miR-186	CLIP-seq
MIRT1190723	hsa-miR-202	CLIP-seq
MIRT2582243	hsa-miR-216a	CLIP-seq
MIRT2582244	hsa-miR-2681	CLIP-seq
MIRT1190726	hsa-miR-31	CLIP-seq
MIRT1190727	hsa-miR-3125	CLIP-seq
MIRT2284175	hsa-miR-3159	CLIP-seq
MIRT2582245	hsa-miR-3670	CLIP-seq
MIRT2582246	hsa-miR-371b-5p	CLIP-seq
MIRT1190740	hsa-miR-3916	CLIP-seq
MIRT1190741	hsa-miR-3927	CLIP-seq
MIRT1190744	hsa-miR-4267	CLIP-seq
MIRT2284176	hsa-miR-4324	CLIP-seq
MIRT2582247	hsa-miR-4436b-5p	CLIP-seq
MIRT2055228	hsa-miR-4438	CLIP-seq
MIRT1190753	hsa-miR-4458	CLIP-seq
MIRT1190755	hsa-miR-4500	CLIP-seq
MIRT1190757	hsa-miR-451b	CLIP-seq
MIRT2284177	hsa-miR-4663	CLIP-seq
MIRT2284178	hsa-miR-4682	CLIP-seq
MIRT1190761	hsa-miR-4708-3p	CLIP-seq
MIRT1190766	hsa-miR-4733-3p	CLIP-seq
MIRT1190767	hsa-miR-4735-5p	CLIP-seq
MIRT2582248	hsa-miR-4738-3p	CLIP-seq
MIRT1190768	hsa-miR-4775	CLIP-seq
MIRT2284179	hsa-miR-4787-3p	CLIP-seq
MIRT2582249	hsa-miR-490-5p	CLIP-seq
MIRT2284181	hsa-miR-498	CLIP-seq
MIRT2055229	hsa-miR-5095	CLIP-seq
MIRT2582250	hsa-miR-526b	CLIP-seq
MIRT2284182	hsa-miR-544b	CLIP-seq
MIRT1190778	hsa-miR-548a-5p	CLIP-seq
MIRT1190779	hsa-miR-548ab	CLIP-seq
MIRT1190783	hsa-miR-548ak	CLIP-seq
MIRT1190784	hsa-miR-548b-5p	CLIP-seq
MIRT1190785	hsa-miR-548c-5p	CLIP-seq
MIRT1190786	hsa-miR-548d-5p	CLIP-seq
MIRT1190787	hsa-miR-548h	CLIP-seq
MIRT1190788	hsa-miR-548i	CLIP-seq
MIRT1190789	hsa-miR-548j	CLIP-seq
MIRT1190790	hsa-miR-548k	CLIP-seq
MIRT1190791	hsa-miR-548l	CLIP-seq
MIRT1190793	hsa-miR-548w	CLIP-seq
MIRT1190794	hsa-miR-548y	CLIP-seq
MIRT1190795	hsa-miR-559	CLIP-seq
MIRT1190796	hsa-miR-562	CLIP-seq
MIRT1190801	hsa-miR-590-3p	CLIP-seq
MIRT2284184	hsa-miR-628-5p	CLIP-seq
MIRT1190808	hsa-miR-98	CLIP-seq
MIRT1190702	hsa-let-7a	CLIP-seq
MIRT1190703	hsa-let-7b	CLIP-seq
MIRT1190704	hsa-let-7c	CLIP-seq
MIRT1190705	hsa-let-7d	CLIP-seq
MIRT1190706	hsa-let-7e	CLIP-seq
MIRT1190707	hsa-let-7f	CLIP-seq
MIRT1190708	hsa-let-7g	CLIP-seq
MIRT1190709	hsa-let-7i	CLIP-seq
MIRT2582242	hsa-miR-103b	CLIP-seq
MIRT2284174	hsa-miR-1200	CLIP-seq
MIRT1190719	hsa-miR-1304	CLIP-seq
MIRT1190723	hsa-miR-202	CLIP-seq
MIRT2582243	hsa-miR-216a	CLIP-seq
MIRT1190726	hsa-miR-31	CLIP-seq
MIRT1190727	hsa-miR-3125	CLIP-seq
MIRT2284175	hsa-miR-3159	CLIP-seq
MIRT1190740	hsa-miR-3916	CLIP-seq
MIRT1190741	hsa-miR-3927	CLIP-seq
MIRT1190744	hsa-miR-4267	CLIP-seq
MIRT2284176	hsa-miR-4324	CLIP-seq
MIRT2582247	hsa-miR-4436b-5p	CLIP-seq
MIRT2055228	hsa-miR-4438	CLIP-seq
MIRT1190753	hsa-miR-4458	CLIP-seq
MIRT1190755	hsa-miR-4500	CLIP-seq
MIRT1190757	hsa-miR-451b	CLIP-seq
MIRT2284177	hsa-miR-4663	CLIP-seq
MIRT2284178	hsa-miR-4682	CLIP-seq
MIRT1190761	hsa-miR-4708-3p	CLIP-seq
MIRT1190766	hsa-miR-4733-3p	CLIP-seq
MIRT2582248	hsa-miR-4738-3p	CLIP-seq
MIRT2284179	hsa-miR-4787-3p	CLIP-seq
MIRT2284181	hsa-miR-498	CLIP-seq
MIRT2055229	hsa-miR-5095	CLIP-seq
MIRT2582250	hsa-miR-526b	CLIP-seq
MIRT2284182	hsa-miR-544b	CLIP-seq
MIRT1190778	hsa-miR-548a-5p	CLIP-seq
MIRT1190779	hsa-miR-548ab	CLIP-seq
MIRT1190783	hsa-miR-548ak	CLIP-seq
MIRT1190784	hsa-miR-548b-5p	CLIP-seq
MIRT1190785	hsa-miR-548c-5p	CLIP-seq
MIRT1190786	hsa-miR-548d-5p	CLIP-seq
MIRT1190787	hsa-miR-548h	CLIP-seq
MIRT1190788	hsa-miR-548i	CLIP-seq
MIRT1190789	hsa-miR-548j	CLIP-seq
MIRT1190790	hsa-miR-548k	CLIP-seq
MIRT1190791	hsa-miR-548l	CLIP-seq
MIRT1190793	hsa-miR-548w	CLIP-seq
MIRT1190794	hsa-miR-548y	CLIP-seq
MIRT1190795	hsa-miR-559	CLIP-seq
MIRT1190796	hsa-miR-562	CLIP-seq
MIRT2284184	hsa-miR-628-5p	CLIP-seq
MIRT1190808	hsa-miR-98	CLIP-seq

Show/Hide all(44)

GO ID	Ontology	Definition	Evidence	Reference
GO:0001822	Process	Kidney development	IBA
GO:0001822	Process	Kidney development	IEA
GO:0001822	Process	Kidney development	IMP	20007846
GO:0001947	Process	Heart looping	IMP	18371931, 20007846
GO:0003283	Process	Atrial septum development	IMP	18371931
GO:0005515	Function	Protein binding	IPI	12872122, 18371931, 22085962, 22863007, 22960633, 23418306, 27173435, 29959317, 33961781
GO:0005576	Component	Extracellular region	IEA
GO:0005829	Component	Cytosol	TAS
GO:0005929	Component	Cilium	IDA	20462968, 22085962
GO:0005929	Component	Cilium	IEA
GO:0005929	Component	Cilium	TAS
GO:0006629	Process	Lipid metabolic process	IEA
GO:0007163	Process	Establishment or maintenance of cell polarity	IEA
GO:0007368	Process	Determination of left/right symmetry	IBA
GO:0007368	Process	Determination of left/right symmetry	IEA
GO:0007368	Process	Determination of left/right symmetry	IMP	18371931
GO:0016055	Process	Wnt signaling pathway	IEA
GO:0030198	Process	Extracellular matrix organization	IEA
GO:0030324	Process	Lung development	IMP	20007846
GO:0035469	Process	Determination of pancreatic left/right asymmetry	IMP	20007846
GO:0042995	Component	Cell projection	IEA
GO:0045494	Process	Photoreceptor cell maintenance	IMP	12872122
GO:0048496	Process	Maintenance of animal organ identity	IEA
GO:0048496	Process	Maintenance of animal organ identity	IMP	12872122
GO:0060026	Process	Convergent extension	IBA
GO:0060027	Process	Convergent extension involved in gastrulation	IGI	18371931
GO:0060271	Process	Cilium assembly	IEA
GO:0060271	Process	Cilium assembly	ISS
GO:0060287	Process	Epithelial cilium movement involved in determination of left/right asymmetry	IC
GO:0060993	Process	Kidney morphogenesis	IBA
GO:0060993	Process	Kidney morphogenesis	IEA
GO:0060993	Process	Kidney morphogenesis	IMP	18371931
GO:0071908	Process	Determination of intestine left/right asymmetry	IMP	20007846
GO:0071909	Process	Determination of stomach left/right asymmetry	IMP	18371931
GO:0071910	Process	Determination of liver left/right asymmetry	IMP	20007846
GO:0072189	Process	Ureter development	IMP	18371931
GO:0090090	Process	Negative regulation of canonical Wnt signaling pathway	IDA	18371931
GO:0097543	Component	Ciliary inversin compartment	IBA
GO:0097543	Component	Ciliary inversin compartment	IEA
GO:0097546	Component	Ciliary base	IBA
GO:0097546	Component	Ciliary base	IEA
GO:1905515	Process	Non-motile cilium assembly	IEA
GO:2000095	Process	Regulation of Wnt signaling pathway, planar cell polarity pathway	IDA	18371931
GO:2000095	Process	Regulation of Wnt signaling pathway, planar cell polarity pathway	ISS

MIM	HGNC	e!Ensembl
608002	7907	ENSG00000113971

Protein

UniProt ID

Q7Z494

Protein name

Nephrocystin-3

Protein function

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a

PDB

5L7K

Family and domains

Pfam

Accession	ID	Position in sequence	Type
PF13424	TPR_12	941 → 1017	Repeat
PF13424	TPR_12	999 → 1059	Repeat
PF13424	TPR_12	1116 → 1167	Repeat
PF13424	TPR_12	1133 → 1209	Repeat
PF13424	TPR_12	1175 → 1251	Repeat
PF13424	TPR_12	1217 → 1293	Repeat

Tissue specificity

TISSUE SPECIFICITY: Widely expressed at low level. Expressed in heart, placenta, liver, skeletal muscle, kidney and pancreas. Expressed at very low level in brain and lung. {ECO:0000269|PubMed:12872122}.

Sequence

MGTASSLVSPAGGEVIEDTYGAGGGEACEIPVEVKPKARLLRNSFRRGAGAAAGAGPGSL
PRGVGAGGLLGASFKSTGSSVPELEYAAAEYERLRKEYEIFRVSKNQELLSMGRREAKLD
TENKRLRAELQALQKTYQKILREKESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKE
NEIQDLLRAKRELESKLQRLQAQGIQVFDPGESDSDDNCTDVTAAGTQCEYWTGGALGSE
PSIGSMIQLQQSFRGPEFAHSSIDVEGPFANVNRDDWDIAVASLLQVTPLFSHSLWSNTV
RCYLIYTDETQPEMDLFLKDYSPKLKRMCETMGYFFHAVYFPIDVENQYLTVRKWEIEKS
SLVILFIHLTLPSLLLEDCEEAFLKNPEGKPRLIFHRLEDGKVSSDSVQQLIDQVSNLNK
TSKAKIIDHSGDPAEGVYKTYICVEKIIKQDILGFENTDLETKDLGSEDSIPEEDDFGDV
LWDIHDEQEQMETFQQASNSAHELGFEKYYQRLNDLVAAPAPIPPLLVSGGPGSGKSLLL
SKWIQLQQKNSPNTLILSHFVGRPMSTSSESSLIIKRLTLKLMQHSWSVSALTLDPAKLL
EEFPRWLEKLSARHQGSIIIVIDSIDQVQQVEKHMKWLIDPLPVNVRVIVSVNVETCPPA
WRLWPTLHLDPLSPKDAKSIIIAECHSVDIKLSKEQEKKLERHCRSATTCNALYVTLFGK
MIARAGRAGNLDKILHQCFQCQDTLSLYRLVLHSIRESMANDVDKELMKQILCLVNVSHN
GVSESELMELYPEMSWTFLTSLIHSLYKMCLLTYGCGLLRFQHLQAWETVRLEYLEGPTV
TSSYRQKLINYFTLQLSQDRVTWRSADELPWLFQQQGSKQKLHDCLLNLFVSQNLYKRGH
FAELLSYWQFVGKDKSAMATEYFDSLKQYEKNCEGEDNMSCLADLYETLGRFLKDLGLLS
QAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYG
ADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRRRALQL
EELTLGKDTPDNARTLNELGVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNN
LAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLY
ELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRV
GETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAETSLLGGKAPSRHSSSGDTFSLKTAHS
PNVFLQQGQR

Sequence length

1330

Interactions

View interactions

	Reactome
			Trafficking of myristoylated proteins to the cilium

Show/Hide Causal Diseases (5)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Meckel-Like Syndrome	nphp3-related meckel-like syndrome	rs201237799, rs1576660495, rs267606916, rs751527253, rs119456961, rs119456962, rs780020801	N/A
Nephronophthisis	nephronophthisis, nephronophthisis 3	rs1560002147, rs763300393, rs771215577, rs758238787, rs780020801, rs771742823, rs267606916, rs201237799, rs1576660495, rs182135982, rs119456959, rs758498695, rs773521620, rs1560017690, rs759262253 View all (19 more)	N/A
RENAL-HEPATIC-PANCREATIC DYSPLASIA	renal-hepatic-pancreatic dysplasia 1	rs119456963, rs780020801, rs119456964, rs751527253	N/A
Joubert Syndrome	Joubert syndrome and related disorders	rs267606916, rs1456714047, rs398124546, rs1553773296	N/A
polycystic kidney disease	Polycystic kidney disease	rs751527253	N/A

Show/Hide Unknown Diseases (11)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Bardet-Biedl Syndrome	bardet-biedl syndrome	N/A	N/A	ClinVar
Bipolar Disorder	Bipolar disorder	N/A	N/A	GWAS
Dementia	Dementia	N/A	N/A	GWAS
focal segmental glomerulosclerosis	Focal segmental glomerulosclerosis	N/A	N/A	ClinVar
Gout	Gout	N/A	N/A	GWAS
Hemolytic Uremic Syndrome	Atypical hemolytic-uremic syndrome	N/A	N/A	ClinVar
Leber Congenital Amaurosis	leber congenital amaurosis	N/A	N/A	ClinVar
Meckel-Gruber Syndrome	meckel-gruber syndrome	N/A	N/A	ClinVar
Optic Atrophy	optic atrophy	N/A	N/A	ClinVar
retinal dystrophy	Retinal dystrophy	N/A	N/A	ClinVar
Senior-Loken Syndrome	Senior-Loken syndrome	N/A	N/A	GenCC

Show/Hide Text Mining Associations (19)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Carcinogenesis	Associate	31048733
Carcinoma Renal Cell	Associate	38179759
Chemical and Drug Induced Liver Injury	Associate	19177160
Ciliopathies	Associate	20007846, 21068128, 34212438
Heart Valve Diseases	Associate	33518654
Hepatic Fibrosis Congenital	Associate	34212438
Hepatorenal Syndrome	Associate	34212438
Hypoxia Brain	Stimulate	36498831
Idiopathic Pulmonary Fibrosis	Associate	34212438
Kidney Failure Chronic	Associate	19177160, 30002499
Liver Cirrhosis	Associate	36227438
Medullary cystic kidney disease 1	Associate	12234310
Neoplasms	Associate	36498831
Nephronophthisis 2	Associate	19177160
Nephronophthisis 3	Associate	19177160, 20007846
Nephronophthisis familial juvenile	Associate	12205563, 12234310, 17617513, 18076122, 34212438
Prostatic Neoplasms	Associate	28403887
Renal Hepatic Pancreatic Dysplasia	Associate	20007846
Syndrome	Associate	36227438

NPHP3 (nephrocystin 3)