Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
26503
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier family 17 member 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLC17A5
Synonyms (NCBI Gene) Gene synonyms aliases
AST, ISSD, NSD, SD, SIALIN, SIASD, SLD, VEAT
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q13
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a membrane transporter that exports free sialic acids that have been cleaved off of cell surface lipids and proteins from lysosomes. Mutations in this gene cause sialic acid storage diseases, including infantile sialic acid storage disor
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs74360232 C>T Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs80338794 G>A Pathogenic Coding sequence variant, missense variant
rs80338795 T>A,C Pathogenic-likely-pathogenic, pathogenic Coding sequence variant, missense variant, stop gained
rs119491109 T>C Pathogenic Missense variant, coding sequence variant
rs119491110 G>A,C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT002576 hsa-miR-124-3p Microarray 15685193
MIRT018617 hsa-miR-335-5p Microarray 18185580
MIRT002576 hsa-miR-124-3p Microarray 18668037
MIRT002576 hsa-miR-124-3p Microarray 15685193
MIRT027706 hsa-miR-98-5p Microarray 19088304
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005351 Function Carbohydrate:proton symporter activity TAS 10581036
GO:0005764 Component Lysosome IBA
GO:0005764 Component Lysosome IEA
GO:0005765 Component Lysosomal membrane HDA 17897319
GO:0005765 Component Lysosomal membrane IDA 3961501
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604322 10933 ENSG00000119899
Protein
UniProt ID Q9NRA2
Protein name Sialin (H(+)/nitrate cotransporter) (H(+)/sialic acid cotransporter) (AST) (Membrane glycoprotein HP59) (Solute carrier family 17 member 5) (Vesicular excitatory amino acid transporter) (VEAT)
Protein function Multifunctional anion transporter that operates via two distinct transport mechanisms, namely proton-coupled anion cotransport and membrane potential-dependent anion transport (PubMed:15510212, PubMed:21781115, PubMed:22778404, PubMed:23889254).
PDB 8DWI , 8U3D , 8U3E , 8U3F , 8U3G , 8U3H , 9AYB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07690 MFS_1 46 441 Major Facilitator Superfamily Family
Tissue specificity TISSUE SPECIFICITY: In the adult, detected in placenta, kidney and pancreas. Abundant in the endothelial cells of tumors from ovary, colon, breast and lung, but is not detected in endothelial cells from the corresponding normal tissues (PubMed:10581036, P
Sequence
Sequence length 495
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Lysosome   Sialic acid metabolism
Organic anion transporters
Defective SLC17A5 causes Salla disease (SD) and ISSD
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Salla Disease salla disease rs386833994, rs1554164078, rs1474077825, rs1057517111, rs80338795, rs1057516505, rs386833995, rs146095590, rs766036082, rs1057517119, rs1057517269, rs386833996, rs1554162230, rs1057516910, rs386833987
View all (36 more)
N/A
Sialic Acid Storage Disease Sialic acid storage disease, severe infantile type rs80338795, rs1768948534, rs727504156, rs769235753, rs80338794, rs794729653, rs119491109, rs201284672, rs146095590, rs119491110, rs386833994 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Enhanced S-Cone Syndrome enhanced s-cone syndrome N/A N/A ClinVar
focal segmental glomerulosclerosis Focal segmental glomerulosclerosis N/A N/A ClinVar
Hypomagnesemia Familial hypokalemia-hypomagnesemia N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adrenal Hyperplasia Congenital Associate 19352053
Adult onset citrullinemia type 2 Associate 23112554
Alcoholism Associate 34857913
Alpha Methylacyl CoA Racemase Deficiency Stimulate 31951345
Anaplasmosis Associate 31539395
Arthritis Juvenile Stimulate 30847869
Biliary Atresia Associate 6137197
Blast Crisis Associate 33557955
Bronchiolitis Obliterans Syndrome Associate 22006860
Bronchopneumonia Associate 38013276