Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2626
Gene name Gene Name - the full gene name approved by the HGNC.
GATA binding protein 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GATA4
Synonyms (NCBI Gene) Gene synonyms aliases
ASD2, TACHD, TOF, VSD1
Chromosome Chromosome number
8
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8p23.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the GATA family of zinc-finger transcription factors. Members of this family recognize the GATA motif which is present in the promoters of many genes. This protein is thought to regulate genes involved in embryogenesis and in
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs745379 A>G Conflicting-interpretations-of-pathogenicity Intron variant
rs804280 C>A,G,T Pathogenic, uncertain-significance Intron variant
rs3729851 G>A Conflicting-interpretations-of-pathogenicity Intron variant
rs3729856 A>G Benign, likely-pathogenic Missense variant, coding sequence variant
rs3735819 T>C,G Conflicting-interpretations-of-pathogenicity Intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000393 hsa-miR-1-3p Luciferase reporter assay 19188439
MIRT004008 hsa-miR-200b-3p Microarray 17875710
MIRT006808 hsa-miR-26b-5p Immunocytochemistry, Luciferase reporter assay, Northern blot, qRT-PCR, Western blot 22219180
MIRT047394 hsa-miR-34a-5p CLASH 23622248
MIRT004008 hsa-miR-200b-3p Flow, qRT-PCR, Western blot 23558708
Transcription factors
Transcription factor Regulation Reference
HAND2 Unknown 11994297
HEY1 Repression 16199874
HEY2 Repression 16199874
MYC Activation 23239811
NANOG Repression 15983365
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IDA 9566909
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IGI 21330551
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600576 4173 ENSG00000136574
Protein
UniProt ID P43694
Protein name Transcription factor GATA-4 (GATA-binding factor 4)
Protein function Transcriptional activator that binds to the consensus sequence 5'-AGATAG-3' and plays a key role in cardiac development and function (PubMed:24000169, PubMed:27984724, PubMed:35182466). In cooperation with TBX5, it binds to cardiac super-enhance
PDB 2M9W , 8VG0 , 8VG1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05349 GATA-N 1 205 GATA-type transcription activator, N-terminal Family
PF00320 GATA 217 251 GATA zinc finger Domain
PF00320 GATA 271 305 GATA zinc finger Domain
Sequence
Sequence length 442
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  cGMP-PKG signaling pathway
Cellular senescence
Tight junction
Thyroid hormone signaling pathway
  YAP1- and WWTR1 (TAZ)-stimulated gene expression
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
Physiological factors
Factors involved in megakaryocyte development and platelet production
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
46, XY Sex Reversal 46,xy sex reversal 3 rs1585684790 N/A
Atrial Septal Defect atrial septal defect 2 rs104894073, rs1585703301, rs104894074 N/A
Atrioventricular septal defect atrioventricular septal defect 4 rs104894073 N/A
Congenital Heart Disease congenital heart disease rs864321702, rs864321705, rs864321704, rs1554498312, rs864321698, rs864321703, rs864321700, rs864321701 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
46, XY partial gonadal dysgenesis 46,XY partial gonadal dysgenesis N/A N/A GenCC
Atrial Fibrillation Atrial fibrillation, familial atrial fibrillation N/A N/A GWAS, GenCC
Brugada Syndrome Brugada syndrome N/A N/A GWAS
Cardiomyopathy Primary dilated cardiomyopathy N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
46 XY female Associate 31962012
6q24 Related Transient Neonatal Diabetes Mellitus Associate 24696446, 33865372
Abnormalities Drug Induced Associate 19606479
Abortion Habitual Associate 40430071
Adenocarcinoma Associate 28052061, 33547361
Adenocarcinoma of Lung Associate 23239811
Adenoma Associate 21154739
Alcoholism Associate 29415147
Anxiety Associate 29415147
Aortic Coarctation Associate 30834692, 37635136