Gene Gene information from NCBI Gene database.
Entrez ID 2624
Gene name GATA binding protein 2
Gene symbol GATA2
Synonyms (NCBI Gene)
DCMLIMD21MONOMACNFE1B
Chromosome 3
Chromosome location 3q21.3
Summary This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded protein plays an essential role in regulating transcript
SNPs SNP information provided by dbSNP.
56
SNP ID Visualize variation Clinical significance Consequence
rs142993548 C>A,G,T Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
rs143590990 G>A,C Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs376003468 G>A,T Likely-pathogenic, likely-benign Missense variant, coding sequence variant, synonymous variant
rs387906629 G>A Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs387906630 G>A,C Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
93
miRTarBase ID miRNA Experiments Reference
MIRT029763 hsa-miR-26b-5p Microarray 19088304
MIRT054893 hsa-miR-27a-3p Luciferase reporter assay 23322776
MIRT054893 hsa-miR-27a-3p Luciferase reporter assay 23322776
MIRT734853 hsa-miR-675-5p Luciferase reporter assayWestern blottingRNA-seq 33513878
MIRT1012484 hsa-miR-200b CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
HDAC3 Repression 11567998
NANOG Repression 15983365
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
112
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
137295 4171 ENSG00000179348
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P23769
Protein name Endothelial transcription factor GATA-2 (GATA-binding protein 2)
Protein function Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells. Binds to the consensus sequence 5'-AGATAG-3'.
PDB 5O9B , 6ZFV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00320 GATA 295 329 GATA zinc finger Domain
PF00320 GATA 349 383 GATA zinc finger Domain
Tissue specificity TISSUE SPECIFICITY: Endothelial cells.
Sequence
MEVAPEQPRWMAHPAVLNAQHPDSHHPGLAHNYMEPAQLLPPDEVDVFFNHLDSQGNPYY
ANPAHARARVSYSPAHARLTGGQMCRPHLLHSPGLPWLDGGKAALSAAAAHHHNPWTVSP
FSKTPLHPSAAGGPGGPLSVYPGAGGGSGGGSGSSVASLTPTAAHSGSHLFGFPPTPPKE
VSPDPSTTGAASPASSSAGGSAARGEDKDGVKYQVSLTESMKMESGSPLRPGLATMGTQP
ATHHPIPTYPSYVPAAAHDYSSGLFHPGGFLGGPASSFTPKQRSKARSCSEGRECVNCGA
TATPLWRRDGTGHYLCNACGLYHKMNGQN
RPLIKPKRRLSAARRAGTCCANCQTTTTTLW
RRNANGDPVCNACGLYYKLHNVN
RPLTMKKEGIQTRNRKMSNKSKKSKKGAECFEELSKC
MQEKSSPFSAAALAGHMAPVGHLPPFSHSGHILPTPTPIHPSSSLSFGHPHPSSMVTAMG
Sequence length 480
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    RUNX1 regulates transcription of genes involved in differentiation of HSCs
Factors involved in megakaryocyte development and platelet production
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
3104
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely pathogenic; Pathogenic rs1426175410 RCV003224332
Deafness-lymphedema-leukemia syndrome Pathogenic; Likely pathogenic rs146150325, rs1576748366, rs2107672568, rs2107672654, rs1338194519, rs2107667915, rs2107668010, rs1553770434, rs2107668072, rs2107668103, rs2107668602, rs148942346, rs2107668794, rs2107673633, rs2107668041
View all (142 more)
RCV001542132
RCV001389075
RCV001389077
RCV001381968
RCV001541963
RCV001541958
RCV001541957
RCV001541954
RCV001541951
RCV001541949
RCV001541948
RCV001541947
RCV001541967
RCV001541944
RCV001542173
RCV001542172
RCV001542170
RCV001542169
RCV001542168
RCV001542167
RCV001542166
RCV001542128
RCV001542165
RCV001542164
RCV001542163
RCV001542162
RCV001542129
RCV001542126
RCV001542125
RCV001542123
RCV001542122
RCV001542120
RCV001542121
RCV001542230
RCV001542119
RCV001542235
RCV001542233
RCV001542229
RCV001542227
RCV001542225
RCV001542224
RCV001542206
RCV001542207
RCV001542197
RCV001542201
RCV001542203
RCV001542200
RCV001542199
RCV001542148
RCV001542198
RCV001542159
RCV001542149
RCV001542196
RCV001542147
RCV001542195
RCV001542193
RCV001542194
RCV001542158
RCV001542192
RCV001542160
RCV001542156
RCV001542155
RCV001542152
RCV001542151
RCV001542150
RCV001542114
RCV001542115
RCV001542113
RCV001542111
RCV001542109
RCV001542108
RCV001542107
RCV001542106
RCV001542105
RCV001542102
RCV001542104
RCV001542103
RCV001542222
RCV001542221
RCV001542220
RCV001542219
RCV001542218
RCV001542215
RCV001542213
RCV001542212
RCV001542211
RCV001542210
RCV001542209
RCV001542208
RCV001542191
RCV001542186
RCV001542187
RCV001542185
RCV001542183
RCV001542182
RCV001542181
RCV001542180
RCV001542178
RCV001542179
RCV001542177
RCV001542176
RCV001542145
RCV001542144
RCV001542143
RCV001542141
RCV001542140
RCV001542139
RCV001542137
RCV001542138
RCV001542133
RCV001542134
RCV001542131
RCV001542130
RCV001542101
RCV001542100
RCV001941808
RCV001960693
RCV001888226
RCV002815853
RCV002856671
RCV001542205
RCV002838538
RCV002834496
RCV002857223
RCV002871180
RCV002871688
RCV000199975
RCV000197751
RCV003013144
RCV003043338
RCV003049305
RCV003801539
RCV003809129
RCV003801403
RCV003801405
RCV003808876
RCV003802058
RCV003815455
RCV003815489
RCV003804969
RCV001384284
RCV000706855
RCV001542117
RCV001542136
RCV001542189
RCV001542153
RCV000022569
RCV000022570
RCV000022571
RCV000022572
RCV000022573
RCV001542228
RCV000987321
RCV001542236
RCV000529588
RCV000528994
RCV001541945
RCV000649493
RCV000686956
RCV000686407
RCV000696729
RCV001541946
RCV000793168
RCV000800905
RCV001541952
RCV001062521
RCV001542157
RCV001542214
RCV001542190
RCV001386685
RCV001542184
RCV000987322
RCV000987323
RCV000987325
RCV001059063
RCV001214332
RCV001207183
GATA2 deficiency with susceptibility to MDS/AML Pathogenic; Likely pathogenic rs146150325, rs1338194519, rs2107667915, rs2107668010, rs1553770434, rs2107668072, rs2107668103, rs2107668602, rs148942346, rs2107668794, rs2107673633, rs2107668041, rs2107668121, rs2107668551, rs2107668560
View all (112 more)
RCV001542132
RCV001541963
RCV001541958
RCV001541957
RCV001541954
RCV001541951
RCV001541949
RCV001541948
RCV001541947
RCV001541967
RCV001541944
RCV001542173
RCV001542172
RCV001542170
RCV001542169
RCV001542168
RCV001542167
RCV001542166
RCV001542128
RCV001542165
RCV001542164
RCV001542163
RCV001542162
RCV001542129
RCV001542126
RCV001542125
RCV001542123
RCV001542122
RCV001542120
RCV001542121
RCV001542230
RCV001542119
RCV001542235
RCV001542233
RCV001542229
RCV001542227
RCV001542225
RCV001542224
RCV001542206
RCV001542207
RCV001542197
RCV001542201
RCV001542203
RCV001542200
RCV001542199
RCV001542148
RCV001542198
RCV001542159
RCV001542149
RCV001542196
RCV001542147
RCV001542195
RCV001542193
RCV001542194
RCV001542158
RCV001542192
RCV001542160
RCV001542156
RCV001542155
RCV001542152
RCV001542151
RCV001542150
RCV001542114
RCV001542115
RCV001542113
RCV001542111
RCV001542109
RCV001542108
RCV001542107
RCV001542106
RCV001542105
RCV001542102
RCV001542104
RCV001542103
RCV001542222
RCV001542221
RCV001542220
RCV001542219
RCV001542218
RCV001542215
RCV001542213
RCV001542212
RCV001542211
RCV001542210
RCV001542209
RCV001542208
RCV001542191
RCV001542186
RCV001542187
RCV001542185
RCV001542183
RCV001542182
RCV001542181
RCV001542180
RCV001542178
RCV001542179
RCV001542177
RCV001542176
RCV001542145
RCV001542144
RCV001542143
RCV001542141
RCV001542140
RCV001542139
RCV001542137
RCV001542138
RCV001542133
RCV001542134
RCV001542131
RCV001542130
RCV001542101
RCV001542100
RCV001542205
RCV001542124
RCV001541956
RCV001542226
RCV001542117
RCV001542136
RCV001542189
RCV001542153
RCV001542142
RCV001542135
RCV001542112
RCV001542161
RCV001542238
RCV001542228
RCV001542118
RCV001542236
RCV001541953
RCV001542237
RCV001541945
RCV001542146
RCV001542216
RCV001541946
RCV001542110
RCV001541952
RCV001542157
RCV001542214
RCV001542190
RCV001542188
RCV001542184
RCV001542202
RCV001541955
GATA2-related disorder Likely pathogenic; Pathogenic rs867160952, rs2472934740, rs387906632, rs1553770510 RCV004728765
RCV005239516
RCV003891441
RCV003892022
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Anemia Uncertain significance rs1480450110 RCV000626766
Gastric cancer Benign rs4577488 RCV005912112
Hereditary cancer Conflicting classifications of pathogenicity rs370164300 RCV005600912
Hereditary cancer-predisposing syndrome Conflicting classifications of pathogenicity; Likely benign; Uncertain significance; Benign rs765884493, rs769794900, rs1353328065, rs2107673586, rs371096438, rs2107672283, rs370750401, rs143590990, rs199640729, rs148554346, rs113384352, rs775573177, rs754297885, rs372912472, rs150052821
View all (22 more)
RCV002255659
RCV002259116
RCV002256845
RCV002257023
RCV002257024
RCV002257025
RCV002256172
RCV002257600
RCV002255348
RCV002257615
RCV002257616
RCV002256220
RCV002256274
RCV002256240
RCV002258898
RCV002255402
RCV002256278
RCV002256276
RCV002255400
RCV002255401
RCV002256275
RCV002256277
RCV002257773
RCV002255459
RCV002256391
RCV002256392
RCV002255458
RCV002257829
RCV002255460
RCV002256453
RCV002257905
RCV002257906
RCV002257935
RCV002257950
RCV002256521
RCV002256569
RCV002255561
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 33648465
Agammaglobulinemia Associate 34670919
Alzheimer Disease Associate 31377428
Anemia Associate 31035956
Anemia Aplastic Inhibit 11328281, 19772889
Anemia Aplastic Associate 17654061, 23028422, 25359990, 26325290
Anemia Refractory Associate 27013649
Antiphospholipid Syndrome Associate 37901230
Asthma Associate 22246175
Ataxia Telangiectasia Associate 24782050