Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2624
Gene name Gene Name - the full gene name approved by the HGNC.
GATA binding protein 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GATA2
Synonyms (NCBI Gene) Gene synonyms aliases
DCML, IMD21, MONOMAC, NFE1B
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q21.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded protein plays an essential role in regulating transcript
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs142993548 C>A,G,T Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
rs143590990 G>A,C Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs376003468 G>A,T Likely-pathogenic, likely-benign Missense variant, coding sequence variant, synonymous variant
rs387906629 G>A Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs387906630 G>A,C Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT029763 hsa-miR-26b-5p Microarray 19088304
MIRT054893 hsa-miR-27a-3p Luciferase reporter assay 23322776
MIRT054893 hsa-miR-27a-3p Luciferase reporter assay 23322776
MIRT734853 hsa-miR-675-5p Luciferase reporter assay, Western blotting, RNA-seq 33513878
MIRT1012484 hsa-miR-200b CLIP-seq
Transcription factors
Transcription factor Regulation Reference
HDAC3 Repression 11567998
NANOG Repression 15983365
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
137295 4171 ENSG00000179348
Protein
UniProt ID P23769
Protein name Endothelial transcription factor GATA-2 (GATA-binding protein 2)
Protein function Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells. Binds to the consensus sequence 5'-AGATAG-3'.
PDB 5O9B , 6ZFV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00320 GATA 295 329 GATA zinc finger Domain
PF00320 GATA 349 383 GATA zinc finger Domain
Tissue specificity TISSUE SPECIFICITY: Endothelial cells.
Sequence
MEVAPEQPRWMAHPAVLNAQHPDSHHPGLAHNYMEPAQLLPPDEVDVFFNHLDSQGNPYY
ANPAHARARVSYSPAHARLTGGQMCRPHLLHSPGLPWLDGGKAALSAAAAHHHNPWTVSP
FSKTPLHPSAAGGPGGPLSVYPGAGGGSGGGSGSSVASLTPTAAHSGSHLFGFPPTPPKE
VSPDPSTTGAASPASSSAGGSAARGEDKDGVKYQVSLTESMKMESGSPLRPGLATMGTQP
ATHHPIPTYPSYVPAAAHDYSSGLFHPGGFLGGPASSFTPKQRSKARSCSEGRECVNCGA
TATPLWRRDGTGHYLCNACGLYHKMNGQN
RPLIKPKRRLSAARRAGTCCANCQTTTTTLW
RRNANGDPVCNACGLYYKLHNVN
RPLTMKKEGIQTRNRKMSNKSKKSKKGAECFEELSKC
MQEKSSPFSAAALAGHMAPVGHLPPFSHSGHILPTPTPIHPSSSLSFGHPHPSSMVTAMG
Sequence length 480
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    RUNX1 regulates transcription of genes involved in differentiation of HSCs
Factors involved in megakaryocyte development and platelet production
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Deafness-Lymphedema-Leukemia Syndrome deafness-lymphedema-leukemia syndrome rs1553770510, rs1576745256, rs1576745260, rs1576749168, rs1576748378, rs1576749301, rs387906632, rs387906633, rs387906634, rs863224874 N/A
Myelodysplastic Syndrome myelodysplastic syndrome rs1576749014, rs387906631, rs1576745225 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
acute myeloid leukemia Acute myeloid leukemia N/A N/A ClinVar
GATA2 Deficiency GATA2 deficiency with susceptibility to MDS/AML N/A N/A GenCC
Myeloid Leukemia acute myeloid leukemia N/A N/A GenCC
Prostate cancer Prostate cancer N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 33648465
Agammaglobulinemia Associate 34670919
Alzheimer Disease Associate 31377428
Anemia Associate 31035956
Anemia Aplastic Inhibit 11328281, 19772889
Anemia Aplastic Associate 17654061, 23028422, 25359990, 26325290
Anemia Refractory Associate 27013649
Antiphospholipid Syndrome Associate 37901230
Asthma Associate 22246175
Ataxia Telangiectasia Associate 24782050