Gene Gene information from NCBI Gene database.
Entrez ID 262
Gene name Adenosylmethionine decarboxylase 1
Gene symbol AMD1
Synonyms (NCBI Gene)
ADOMETDCAMDSAMDC
Chromosome 6
Chromosome location 6q21
Summary This gene encodes an important intermediate enzyme in polyamine biosynthesis. The polyamines spermine, spermidine, and putrescine are low-molecular-weight aliphatic amines essential for cellular proliferation and tumor promotion. Multiple alternatively sp
miRNA miRNA information provided by mirtarbase database.
468
miRTarBase ID miRNA Experiments Reference
MIRT006862 hsa-miR-762 Luciferase reporter assay 22391449
MIRT006862 hsa-miR-762 Luciferase reporter assay 22391449
MIRT006862 hsa-miR-762 Luciferase reporter assay 22391449
MIRT021147 hsa-miR-186-5p Sequencing 20371350
MIRT050922 hsa-miR-17-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0004014 Function Adenosylmethionine decarboxylase activity IBA
GO:0004014 Function Adenosylmethionine decarboxylase activity IEA
GO:0004014 Function Adenosylmethionine decarboxylase activity TAS 1917972, 2460457
GO:0005515 Function Protein binding IPI 28514442, 32296183, 33961781
GO:0005829 Component Cytosol IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
180980 457 ENSG00000123505
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P17707
Protein name S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SAMDC) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain]
Protein function Essential for biosynthesis of the polyamines spermidine and spermine. Promotes maintenance and self-renewal of embryonic stem cells, by maintaining spermine levels.
PDB 1I72 , 1I79 , 1I7B , 1I7C , 1I7M , 1JEN , 1JL0 , 1MSV , 3DZ2 , 3DZ3 , 3DZ4 , 3DZ5 , 3DZ6 , 3DZ7 , 3EP3 , 3EP4 , 3EP5 , 3EP6 , 3EP7 , 3EP8 , 3EP9 , 3EPA , 3EPB , 3H0V , 3H0W
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01536 SAM_decarbox 4 326 Adenosylmethionine decarboxylase Family
Sequence
Sequence length 334
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cysteine and methionine metabolism
Arginine and proline metabolism
Metabolic pathways
  Metabolism of polyamines
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
2
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 87 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LYMPHOID LEUKEMIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Cap Myopathy Associate 18974881
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Associate 38025761
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Associate 35812454
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Associate 27433286
★☆☆☆☆
Found in Text Mining only
Inflammation Associate 26558825, 27433286
★☆☆☆☆
Found in Text Mining only
Intellectual Disability Associate 30097719
★☆☆☆☆
Found in Text Mining only
Neoplasms Inhibit 17558447
★☆☆☆☆
Found in Text Mining only
Neoplasms Associate 20215859, 27433286
★☆☆☆☆
Found in Text Mining only
Neoplasms Adipose Tissue Associate 22496743
★☆☆☆☆
Found in Text Mining only
Obesity Associate 22496743, 26558825
★☆☆☆☆
Found in Text Mining only