Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
26018
Gene name Gene Name - the full gene name approved by the HGNC.
Leucine rich repeats and immunoglobulin like domains 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LRIG1
Synonyms (NCBI Gene) Gene synonyms aliases
LIG-1, LIG1
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3p14.1
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT022896 hsa-miR-124-3p Microarray 18668037
MIRT024575 hsa-miR-215-5p Microarray 19074876
MIRT026719 hsa-miR-192-5p Microarray 19074876
MIRT027745 hsa-miR-98-5p Microarray 19088304
MIRT049649 hsa-miR-92a-3p CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 15282549, 15345710, 18542056, 23723069, 32296183, 33961781
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IEA
GO:0005886 Component Plasma membrane TAS
GO:0007605 Process Sensory perception of sound IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
608868 17360 ENSG00000144749
Protein
UniProt ID Q96JA1
Protein name Leucine-rich repeats and immunoglobulin-like domains protein 1 (LIG-1)
Protein function Acts as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.
PDB 4U7L , 4U7M
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13855 LRR_8 70 104 Leucine rich repeat Repeat
PF13855 LRR_8 140 189 Leucine rich repeat Repeat
PF13855 LRR_8 188 247 Leucine rich repeat Repeat
PF13855 LRR_8 307 367 Leucine rich repeat Repeat
PF13855 LRR_8 382 442 Leucine rich repeat Repeat
PF01463 LRRCT 465 490 Leucine rich repeat C-terminal domain Family
PF13927 Ig_3 494 581 Domain
PF07679 I-set 599 689 Immunoglobulin I-set domain Domain
PF07679 I-set 693 780 Immunoglobulin I-set domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11414704}.
Sequence
MARPVRGGLGAPRRSPCLLLLWLLLLRLEPVTAAAGPRAPCAAACTCAGDSLDCGGRGLA
ALPGDLPSWTRSLNLSYNKLSEIDPAGFEDLPNLQEVYLNNNELTAVPSLGAASSHVVSL
FLQHNKIRSVEGSQLKAYLSLEVLDLSLNNITEVRNTCFPHGPPIKELNLAGNRIGTLEL
GAFDGLS
RSLLTLRLSKNRITQLPVRAFKLPRLTQLDLNRNRIRLIEGLTFQGLNSLEVL
KLQRNNI
SKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSIARIHR
KGWSFCQKLHELVLSFNNLTRLDEESLAELSSLSVLRLSHNSISHIAEGAFKGLRSLRVL
DLDHNEI
SGTIEDTSGAFSGLDSLSKLTLFGNKIKSVAKRAFSGLEGLEHLNLGGNAIRS
VQFDAFVKMKNLKELHISSDSF
LCDCQLKWLPPWLIGRMLQAFVTATCAHPESLKGQSIF
SVPPESFVCD
DFLKPQIITQPETTMAMVGKDIRFTCSAASSSSSPMTFAWKKDNEVLTNA
DMENFVHVHAQDGEVMEYTTILHLRQVTFGHEGRYQCVITN
HFGSTYSHKARLTVNVLPS
FTKTPHDITIRTTTMARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFIT
DVKIDDAGVYSCTAQNSAGSISANATLTV
LETPSLVVPLEDRVVSVGETVALQCKATGNP
PPRITWFKGDRPLSLTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNTLGTERAHSQLSV

LPAAGCRKDGTTVGIFTIAVVSSIVLTSLVWVCIIYQTRKKSEEYSVTNTDETVVPPDVP
SYLSSQGTLSDRQETVVRTEGGPQANGHIESNGVCPRDASHFPEPDTHSVACRQPKLCAG
SAYHKEPWKAMEKAEGTPGPHKMEHGGRVVCSDCNTEVDCYSRGQAFHPQPVSRDSAQPS
APNGPEPGGSDQEHSPHHQCSRTAAGSCPECQGSLYPSNHDRMLTAVKKKPMASLDGKGD
SSWTLARLYHPDSTELQPASSLTSGSPERAEAQYLLVSNGHLPKACDASPESTPLTGQLP
GKQRVPLLLAPKS
Sequence length 1093
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Signaling by EGFR
Negative regulation of MET activity
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Atrial Fibrillation Atrial fibrillation N/A N/A GWAS
Colorectal Cancer Colorectal cancer N/A N/A GWAS
Hyperuricemia Hyperuricemia N/A N/A GWAS
Kidney Disease Chronic kidney disease N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 40269842
Alzheimer Disease Associate 34151794
Breast Neoplasms Associate 16168117, 21821674, 24879564, 32448168, 34172056, 35440669, 39491279, 40597935
Breast Neoplasms Inhibit 26387542, 38376291
Carcinogenesis Associate 18542056, 20334636
Carcinoma Basal Cell Inhibit 35440669
Carcinoma Ductal Inhibit 38376291
Carcinoma Merkel Cell Associate 34331569
Carcinoma Non Small Cell Lung Associate 26632716, 28230028
Carcinoma Renal Cell Inhibit 14520461