Gene Gene information from NCBI Gene database.
Entrez ID 26018
Gene name Leucine rich repeats and immunoglobulin like domains 1
Gene symbol LRIG1
Synonyms (NCBI Gene)
LIG-1LIG1
Chromosome 3
Chromosome location 3p14.1
miRNA miRNA information provided by mirtarbase database.
329
miRTarBase ID miRNA Experiments Reference
MIRT022896 hsa-miR-124-3p Microarray 18668037
MIRT024575 hsa-miR-215-5p Microarray 19074876
MIRT026719 hsa-miR-192-5p Microarray 19074876
MIRT027745 hsa-miR-98-5p Microarray 19088304
MIRT049649 hsa-miR-92a-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
11
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 15282549, 15345710, 18542056, 23723069, 32296183, 33961781
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IEA
GO:0005886 Component Plasma membrane TAS
GO:0007605 Process Sensory perception of sound IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608868 17360 ENSG00000144749
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96JA1
Protein name Leucine-rich repeats and immunoglobulin-like domains protein 1 (LIG-1)
Protein function Acts as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.
PDB 4U7L , 4U7M
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13855 LRR_8 70 104 Leucine rich repeat Repeat
PF13855 LRR_8 140 189 Leucine rich repeat Repeat
PF13855 LRR_8 188 247 Leucine rich repeat Repeat
PF13855 LRR_8 307 367 Leucine rich repeat Repeat
PF13855 LRR_8 382 442 Leucine rich repeat Repeat
PF01463 LRRCT 465 490 Leucine rich repeat C-terminal domain Family
PF13927 Ig_3 494 581 Domain
PF07679 I-set 599 689 Immunoglobulin I-set domain Domain
PF07679 I-set 693 780 Immunoglobulin I-set domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11414704}.
Sequence
MARPVRGGLGAPRRSPCLLLLWLLLLRLEPVTAAAGPRAPCAAACTCAGDSLDCGGRGLA
ALPGDLPSWTRSLNLSYNKLSEIDPAGFEDLPNLQEVYLNNNELTAVPSLGAASSHVVSL
FLQHNKIRSVEGSQLKAYLSLEVLDLSLNNITEVRNTCFPHGPPIKELNLAGNRIGTLEL
GAFDGLS
RSLLTLRLSKNRITQLPVRAFKLPRLTQLDLNRNRIRLIEGLTFQGLNSLEVL
KLQRNNI
SKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSIARIHR
KGWSFCQKLHELVLSFNNLTRLDEESLAELSSLSVLRLSHNSISHIAEGAFKGLRSLRVL
DLDHNEI
SGTIEDTSGAFSGLDSLSKLTLFGNKIKSVAKRAFSGLEGLEHLNLGGNAIRS
VQFDAFVKMKNLKELHISSDSF
LCDCQLKWLPPWLIGRMLQAFVTATCAHPESLKGQSIF
SVPPESFVCD
DFLKPQIITQPETTMAMVGKDIRFTCSAASSSSSPMTFAWKKDNEVLTNA
DMENFVHVHAQDGEVMEYTTILHLRQVTFGHEGRYQCVITN
HFGSTYSHKARLTVNVLPS
FTKTPHDITIRTTTMARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFIT
DVKIDDAGVYSCTAQNSAGSISANATLTV
LETPSLVVPLEDRVVSVGETVALQCKATGNP
PPRITWFKGDRPLSLTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNTLGTERAHSQLSV

LPAAGCRKDGTTVGIFTIAVVSSIVLTSLVWVCIIYQTRKKSEEYSVTNTDETVVPPDVP
SYLSSQGTLSDRQETVVRTEGGPQANGHIESNGVCPRDASHFPEPDTHSVACRQPKLCAG
SAYHKEPWKAMEKAEGTPGPHKMEHGGRVVCSDCNTEVDCYSRGQAFHPQPVSRDSAQPS
APNGPEPGGSDQEHSPHHQCSRTAAGSCPECQGSLYPSNHDRMLTAVKKKPMASLDGKGD
SSWTLARLYHPDSTELQPASSLTSGSPERAEAQYLLVSNGHLPKACDASPESTPLTGQLP
GKQRVPLLLAPKS
Sequence length 1093
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Signaling by EGFR
Negative regulation of MET activity
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
53
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Gastric cancer Benign rs140051529 RCV005933246
LRIG1-related disorder Benign; Uncertain significance; Likely benign rs61751731, rs201130206, rs754762977, rs143102583, rs11553628, rs116629943, rs61754218, rs112700187, rs768684985, rs1296662149, rs143616236, rs80279768, rs118034960, rs332374, rs149185220
View all (37 more)
RCV003913345
RCV003408367
RCV003938988
RCV003894732
RCV003907303
RCV003919823
RCV003919863
RCV003907339
RCV003964671
RCV003896268
RCV003904169
RCV003916833
RCV003916930
RCV003964403
RCV003973852
RCV003984506
RCV003911631
RCV003909682
RCV003961591
RCV003959689
RCV003959832
RCV003931718
RCV003931728
RCV003927205
RCV003929493
RCV003949335
RCV003951526
RCV003969359
RCV003921988
RCV003922175
RCV003924684
RCV003942225
RCV003956732
RCV003954561
RCV003971736
RCV003971484
RCV003976547
RCV003972259
RCV003969143
RCV003976267
RCV003970265
RCV003983071
RCV003972719
RCV003972720
RCV003970264
RCV003972718
RCV003935859
RCV003935860
RCV003928598
RCV003936165
RCV003906076
RCV003923116
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 40269842
Alzheimer Disease Associate 34151794
Breast Neoplasms Associate 16168117, 21821674, 24879564, 32448168, 34172056, 35440669, 39491279, 40597935
Breast Neoplasms Inhibit 26387542, 38376291
Carcinogenesis Associate 18542056, 20334636
Carcinoma Basal Cell Inhibit 35440669
Carcinoma Ductal Inhibit 38376291
Carcinoma Merkel Cell Associate 34331569
Carcinoma Non Small Cell Lung Associate 26632716, 28230028
Carcinoma Renal Cell Inhibit 14520461