Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2592
Gene name Gene Name - the full gene name approved by the HGNC.
Galactose-1-phosphate uridylyltransferase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GALT
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
9
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
Galactose-1-phosphate uridyl transferase (GALT) catalyzes the second step of the Leloir pathway of galactose metabolism, namely the conversion of UDP-glucose + galactose-1-phosphate to glucose-1-phosphate + UDP-galactose. The absence of this enzyme result
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs2070074 A>G Other, conflicting-interpretations-of-pathogenicity, benign, pathogenic, likely-benign Missense variant, coding sequence variant
rs75391579 A>G Pathogenic Missense variant, coding sequence variant
rs111033634 C>TT Pathogenic, likely-pathogenic Coding sequence variant, frameshift variant, 5 prime UTR variant
rs111033635 A>G Pathogenic Coding sequence variant, 5 prime UTR variant, missense variant
rs111033636 G>A,C,T Conflicting-interpretations-of-pathogenicity, pathogenic Coding sequence variant, 5 prime UTR variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004210 hsa-miR-197-3p Microarray 16822819
MIRT004220 hsa-miR-346 Microarray 16822819
MIRT030075 hsa-miR-26b-5p Microarray 19088304
Transcription factors
Transcription factor Regulation Reference
FOXO3 Activation 17975019
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 16189514, 25416956, 25910212, 26871637, 28514442, 32296183, 33961781
GO:0005737 Component Cytoplasm IBA
GO:0005794 Component Golgi apparatus IDA 20605918
GO:0005829 Component Cytosol TAS
GO:0006011 Process UDP-alpha-D-glucose metabolic process IDA 27005423
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606999 4135 ENSG00000213930
Protein
UniProt ID P07902
Protein name Galactose-1-phosphate uridylyltransferase (Gal-1-P uridylyltransferase) (EC 2.7.7.12) (UDP-glucose--hexose-1-phosphate uridylyltransferase)
Protein function Plays an important role in galactose metabolism.
PDB 5IN3 , 6GQD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01087 GalP_UDP_transf 22 196 Galactose-1-phosphate uridyl transferase, N-terminal domain Domain
PF02744 GalP_UDP_tr_C 202 370 Galactose-1-phosphate uridyl transferase, C-terminal domain Domain
Sequence
Sequence length 379
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Galactose metabolism
Amino sugar and nucleotide sugar metabolism
Metabolic pathways
Biosynthesis of nucleotide sugars
Prolactin signaling pathway
  Defective GALT can cause Galactosemia
Galactose catabolism
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
galactosemia Galactosemia rs111033754, rs111033808, rs111033800, rs111033717, rs111033758, rs398123179, rs111033658, rs111033723, rs111033768, rs786204763, rs111033661, rs111033728, rs111033790, rs111033813, rs111033670
View all (29 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Asthma Asthma N/A N/A GWAS
premature ovarian failure Premature ovarian failure N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Apraxia Ideomotor Inhibit 26733289
Apraxia Ideomotor Associate 30231941
Apraxias Associate 11397328
Attention Deficit Disorder with Hyperactivity Associate 33115496
Carcinoma Renal Cell Associate 26040780
Cataract Associate 173185, 20222886, 28816213
Chromosome 9 tetrasomy 9p Associate 6644773
Congenital Abnormalities Associate 20222886
Endometriosis Associate 11163832
Fever Inhibit 30909744