Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	25844
Gene name Gene Name - the full gene name approved by the HGNC.	Yip1 domain family member 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	YIPF3
Synonyms (NCBI Gene) Gene synonyms aliases	C6orf109, FinGER3, KLIP1, YIPFbeta2, Yip5b, dJ337H4.3
Chromosome Chromosome number	6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	6p21.1

Show/Hide all(109)

miRTarBase ID	miRNA	Experiments	Reference
MIRT052300	hsa-let-7b-5p	CLASH	23622248
MIRT041315	hsa-miR-193b-3p	CLASH	23622248
MIRT039935	hsa-miR-615-3p	CLASH	23622248
MIRT496788	hsa-miR-624-5p	PAR-CLIP	22291592
MIRT496788	hsa-miR-624-5p	PAR-CLIP	22291592
MIRT1498744	hsa-miR-185	CLIP-seq
MIRT1498745	hsa-miR-299-3p	CLIP-seq
MIRT1498746	hsa-miR-3169	CLIP-seq
MIRT1498747	hsa-miR-3183	CLIP-seq
MIRT1498748	hsa-miR-3691-3p	CLIP-seq
MIRT1498749	hsa-miR-4306	CLIP-seq
MIRT1498750	hsa-miR-4436a	CLIP-seq
MIRT1498751	hsa-miR-451b	CLIP-seq
MIRT1498752	hsa-miR-4644	CLIP-seq
MIRT1498753	hsa-miR-4648	CLIP-seq
MIRT1498754	hsa-miR-4654	CLIP-seq
MIRT1498755	hsa-miR-4691-5p	CLIP-seq
MIRT1498756	hsa-miR-4696	CLIP-seq
MIRT1498757	hsa-miR-4705	CLIP-seq
MIRT1498758	hsa-miR-4723-3p	CLIP-seq
MIRT1498759	hsa-miR-4766-3p	CLIP-seq
MIRT1498760	hsa-miR-4769-5p	CLIP-seq
MIRT1498761	hsa-miR-4796-5p	CLIP-seq
MIRT1498762	hsa-miR-499a-5p	CLIP-seq
MIRT1498763	hsa-miR-633	CLIP-seq
MIRT2150205	hsa-miR-1910	CLIP-seq
MIRT2150206	hsa-miR-3158-5p	CLIP-seq
MIRT1498746	hsa-miR-3169	CLIP-seq
MIRT2150207	hsa-miR-4433	CLIP-seq
MIRT2150208	hsa-miR-4435	CLIP-seq
MIRT1498750	hsa-miR-4436a	CLIP-seq
MIRT2150209	hsa-miR-494	CLIP-seq
MIRT1498763	hsa-miR-633	CLIP-seq
MIRT2150210	hsa-miR-665	CLIP-seq
MIRT2150211	hsa-miR-885-3p	CLIP-seq
MIRT2150205	hsa-miR-1910	CLIP-seq
MIRT2150206	hsa-miR-3158-5p	CLIP-seq
MIRT1498746	hsa-miR-3169	CLIP-seq
MIRT1498750	hsa-miR-4436a	CLIP-seq
MIRT2150209	hsa-miR-494	CLIP-seq
MIRT1498763	hsa-miR-633	CLIP-seq
MIRT2150211	hsa-miR-885-3p	CLIP-seq
MIRT2664023	hsa-miR-1184	CLIP-seq
MIRT2664024	hsa-miR-1205	CLIP-seq
MIRT2664025	hsa-miR-1301	CLIP-seq
MIRT2150205	hsa-miR-1910	CLIP-seq
MIRT2664026	hsa-miR-2467-3p	CLIP-seq
MIRT2150206	hsa-miR-3158-5p	CLIP-seq
MIRT1498746	hsa-miR-3169	CLIP-seq
MIRT2664027	hsa-miR-3173-3p	CLIP-seq
MIRT1498747	hsa-miR-3183	CLIP-seq
MIRT2664028	hsa-miR-33a	CLIP-seq
MIRT2664029	hsa-miR-33b	CLIP-seq
MIRT2664030	hsa-miR-3678-3p	CLIP-seq
MIRT2664031	hsa-miR-371-3p	CLIP-seq
MIRT2664032	hsa-miR-3942-3p	CLIP-seq
MIRT2664033	hsa-miR-4312	CLIP-seq
MIRT2150207	hsa-miR-4433	CLIP-seq
MIRT2150208	hsa-miR-4435	CLIP-seq
MIRT1498750	hsa-miR-4436a	CLIP-seq
MIRT2664034	hsa-miR-4660	CLIP-seq
MIRT1498755	hsa-miR-4691-5p	CLIP-seq
MIRT1498758	hsa-miR-4723-3p	CLIP-seq
MIRT2150209	hsa-miR-494	CLIP-seq
MIRT2664035	hsa-miR-5047	CLIP-seq
MIRT2664036	hsa-miR-544	CLIP-seq
MIRT2664037	hsa-miR-548v	CLIP-seq
MIRT2664038	hsa-miR-550a	CLIP-seq
MIRT2664039	hsa-miR-604	CLIP-seq
MIRT1498763	hsa-miR-633	CLIP-seq
MIRT2664040	hsa-miR-647	CLIP-seq
MIRT2664041	hsa-miR-660	CLIP-seq
MIRT2150210	hsa-miR-665	CLIP-seq
MIRT2150211	hsa-miR-885-3p	CLIP-seq
MIRT2664023	hsa-miR-1184	CLIP-seq
MIRT2664024	hsa-miR-1205	CLIP-seq
MIRT2664025	hsa-miR-1301	CLIP-seq
MIRT2150205	hsa-miR-1910	CLIP-seq
MIRT2664026	hsa-miR-2467-3p	CLIP-seq
MIRT2695409	hsa-miR-3153	CLIP-seq
MIRT2150206	hsa-miR-3158-5p	CLIP-seq
MIRT1498746	hsa-miR-3169	CLIP-seq
MIRT2664027	hsa-miR-3173-3p	CLIP-seq
MIRT1498747	hsa-miR-3183	CLIP-seq
MIRT2664028	hsa-miR-33a	CLIP-seq
MIRT2664029	hsa-miR-33b	CLIP-seq
MIRT2664030	hsa-miR-3678-3p	CLIP-seq
MIRT2664031	hsa-miR-371-3p	CLIP-seq
MIRT2664032	hsa-miR-3942-3p	CLIP-seq
MIRT2664033	hsa-miR-4312	CLIP-seq
MIRT2150207	hsa-miR-4433	CLIP-seq
MIRT2150208	hsa-miR-4435	CLIP-seq
MIRT1498750	hsa-miR-4436a	CLIP-seq
MIRT2664034	hsa-miR-4660	CLIP-seq
MIRT1498755	hsa-miR-4691-5p	CLIP-seq
MIRT1498758	hsa-miR-4723-3p	CLIP-seq
MIRT2695410	hsa-miR-4734	CLIP-seq
MIRT2150209	hsa-miR-494	CLIP-seq
MIRT2664035	hsa-miR-5047	CLIP-seq
MIRT2664036	hsa-miR-544	CLIP-seq
MIRT2664037	hsa-miR-548v	CLIP-seq
MIRT2664038	hsa-miR-550a	CLIP-seq
MIRT2695411	hsa-miR-583	CLIP-seq
MIRT2664039	hsa-miR-604	CLIP-seq
MIRT1498763	hsa-miR-633	CLIP-seq
MIRT2664040	hsa-miR-647	CLIP-seq
MIRT2664041	hsa-miR-660	CLIP-seq
MIRT2150210	hsa-miR-665	CLIP-seq
MIRT2150211	hsa-miR-885-3p	CLIP-seq

Show/Hide all(8)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	16189514, 25416956, 28514442, 31515488, 32296183
GO:0005794	Component	Golgi apparatus	IBA	21873635
GO:0005794	Component	Golgi apparatus	IDA
GO:0005886	Component	Plasma membrane	IEA
GO:0016021	Component	Integral component of membrane	IEA
GO:0030133	Component	Transport vesicle	IDA
GO:0030154	Process	Cell differentiation	IEA
GO:0043231	Component	Intracellular membrane-bounded organelle	IDA

MIM	HGNC	e!Ensembl
609775	21023	ENSG00000137207

Protein

UniProt ID

Q9GZM5

Protein name

Protein YIPF3 (Killer lineage protein 1) (Natural killer cell-specific antigen KLIP1) (YIP1 family member 3) [Cleaved into: Protein YIPF3, 36 kDa form III]

Protein function

Involved in the maintenance of the Golgi structure. May play a role in hematopoiesis.

Family and domains

Tissue specificity

TISSUE SPECIFICITY: Expressed by nucleated hematopoietic cells (at protein level). {ECO:0000269|PubMed:12490290}.

Sequence

MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIH
LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH

Sequence length

350

Interactions

View interactions

Show/Hide Causal Diseases (2)

Disease term	Disease name	dbSNP ID	References
Causal
Papillary renal carcinoma	Papillary Renal Cell Carcinoma	rs5030823, rs2137087134, rs121913668, rs121913669, rs121913670, rs121913671, rs121913673, rs121913243, rs786202724	23797736
Renal carcinoma	Renal Cell Carcinoma, Conventional (Clear Cell) Renal Cell Carcinoma, Sarcomatoid Renal Cell Carcinoma, Collecting Duct Carcinoma of the Kidney	rs121913668, rs121913670, rs121913243, rs786202724	23797736

Show/Hide Unknown Diseases (1)

Disease term	Disease name	Evidence	References	Source
Unknown
Chromophobe carcinoma	Chromophobe Renal Cell Carcinoma		23797736	ClinVar

YIPF3 (Yip1 domain family member 3)