Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
25839
Gene name Gene Name - the full gene name approved by the HGNC.
Component of oligomeric golgi complex 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
COG4
Synonyms (NCBI Gene) Gene synonyms aliases
CDG2J, COD1, SWILS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDG2J, SWILS
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16q22.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a component of an oligomeric protein complex involved in the structure and function of the Golgi apparatus. Defects in this gene may be a cause of congenital disorder of glycosylation type IIj. Two transcript variants e
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs267606740 G>A Pathogenic Downstream transcript variant, missense variant, genic downstream transcript variant, coding sequence variant, non coding transcript variant
rs372362031 C>T Likely-pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs376663459 G>A Likely-pathogenic Non coding transcript variant, 5 prime UTR variant, coding sequence variant, stop gained
rs376885733 A>G Conflicting-interpretations-of-pathogenicity, likely-benign Non coding transcript variant, 5 prime UTR variant, synonymous variant, coding sequence variant
rs387907202 C>A,T Pathogenic Non coding transcript variant, stop gained, coding sequence variant, missense variant, 5 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT040817 hsa-miR-18a-3p CLASH 23622248
MIRT039829 hsa-miR-615-3p CLASH 23622248
MIRT902158 hsa-miR-122 CLIP-seq
MIRT902159 hsa-miR-1224-3p CLIP-seq
MIRT902160 hsa-miR-1260 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0005515 Function Protein binding IPI 15047703, 19536132, 32296183
GO:0005829 Component Cytosol IEA
GO:0006888 Process Endoplasmic reticulum to Golgi vesicle-mediated transport TAS
GO:0006890 Process Retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606976 18620 ENSG00000103051
Protein
UniProt ID Q9H9E3
Protein name Conserved oligomeric Golgi complex subunit 4 (COG complex subunit 4) (Component of oligomeric Golgi complex 4)
Protein function Required for normal Golgi function (PubMed:19536132, PubMed:30290151). Plays a role in SNARE-pin assembly and Golgi-to-ER retrograde transport via its interaction with SCFD1 (PubMed:19536132). {ECO:0000269|PubMed:19536132, ECO:0000269|PubMed:302
PDB 3HR0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08318 COG4 188 497 COG4 transport protein Domain
Sequence
MADLDSPPKLSGVQQPSEGVGGGRCSEISAELIRSLTELQELEAVYERLCGEEKVVEREL
DALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKN
RLYQAIQRADDILDLKFCMDGVQTALRSEDYEQAAAHTHRYLCLDKSVIELSRQGKEGSM
IDANLKLLQEAEQRLKAIVAEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLRKFSEYLC
KQVASKAEENLLMVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLY
TLIKYLQVECDRQVEKVVDKFIKQRDYHQQFRHVQNNLMRNSTTEKIEPRELDPILTEVT
LMNARSELYLRFLKKRISSDFEVGDSMASEEVKQEHQKCLDKLLNNCLLSCTMQELIGLY
VTMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSSSSIDCLCAMINL
ATTELESDFRDVLCNKL
RMGFPATTFQDIQRGVTSAVNIMHSSLQQGKFDTKGIESTDEA
KMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKF
RDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQM
AEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTT
WTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRSEDI
KRLRL
Sequence length 785
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    COPI-mediated anterograde transport
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Apraxia Apraxias, Apraxia of Phonation rs121908377, rs121908378, rs1135401820, rs1178491246, rs1584969672
Cataract Cataract, CATARACT 5, MULTIPLE TYPES rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Congenital disorder of glycosylation CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIj, COG4-CDG rs121434387, rs1264383808, rs766244312, rs1555497568, rs1555496968, rs267606740, rs1568296260, rs1562937199, rs28939378, rs121908583, rs1568757730, rs28936415, rs587776874, rs387906831, rs151173406
View all (80 more)
21185756, 19494034, 25529582, 19651599, 27604308, 11980916
Developmental delay Global developmental delay, Gross motor development delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Cirrhosis Cirrhosis ClinVar
Metabolic Syndrome Metabolic Syndrome GWAS
Associations from Text Mining
Disease Name Relationship Type References
Carcinoma Renal Cell Stimulate 34539936
Congenital Disorder Of Glycosylation Type I IIX Associate 21185756
Congenital disorder of glycosylation type II Associate 19494034
Congenital Disorders of Glycosylation Associate 21185756
Diabetic Nephropathies Associate 25359423
Epiphyseal dysplasia multiple 1 Associate 21185756
Hepatolenticular Degeneration Associate 32652690
Multiple Organ Failure Associate 19690088
Nervous System Diseases Associate 19690088