Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2517
Gene name Gene Name - the full gene name approved by the HGNC.
Alpha-L-fucosidase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
FUCA1
Synonyms (NCBI Gene) Gene synonyms aliases
FUCA
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p36.11
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a lysosomal enzyme involved in the degradation of fucose-containing glycoproteins and glycolipids. Mutations in this gene are associated with fucosidosis (FUCA1D), which is an autosomal recessive lysosomal storage disea
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs80358195 C>A,G Pathogenic Missense variant, coding sequence variant, stop gained
rs80358196 G>A Pathogenic 5 prime UTR variant, genic upstream transcript variant, stop gained, upstream transcript variant, coding sequence variant
rs80358197 C>T Pathogenic Coding sequence variant, stop gained
rs80358198 G>A,T Benign, pathogenic Synonymous variant, coding sequence variant, stop gained
rs80358199 A>C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT727636 hsa-miR-30a-5p HITS-CLIP 22473208
MIRT727635 hsa-miR-30b-5p HITS-CLIP 22473208
MIRT727634 hsa-miR-30c-5p HITS-CLIP 22473208
MIRT727632 hsa-miR-30d-5p HITS-CLIP 22473208
MIRT727633 hsa-miR-30e-5p HITS-CLIP 22473208
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004560 Function Alpha-L-fucosidase activity IBA 21873635
GO:0004560 Function Alpha-L-fucosidase activity IDA 19666478
GO:0004560 Function Alpha-L-fucosidase activity TAS 11698403
GO:0005515 Function Protein binding IPI 32296183
GO:0005576 Component Extracellular region TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
612280 4006 ENSG00000179163
Protein
UniProt ID P04066
Protein name Tissue alpha-L-fucosidase (EC 3.2.1.51) (Alpha-L-fucosidase I) (Alpha-L-fucoside fucohydrolase 1) (Alpha-L-fucosidase 1)
Protein function Alpha-L-fucosidase is responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.
PDB 7PLS , 7PM4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01120 Alpha_L_fucos 24 367 Alpha-L-fucosidase Domain
PF16757 Fucosidase_C 378 463 Alpha-L-fucosidase C-terminal domain Domain
Sequence
Sequence length 466
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Other glycan degradation
Lysosome
  Neutrophil degranulation
Reactions specific to the complex N-glycan synthesis pathway
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Fucosidosis Fucosidosis Type I, Fucosidosis Type II, Fucosidosis rs118204450, rs80358195, rs1570679652, rs80358196, rs80358197, rs80358198, rs80358199, rs587779398, rs587779399, rs794727774, rs864309551, rs781230182, rs189315801, rs1556405057, rs1557510081
View all (2 more)
Hypothyroidism Hypothyroidism rs869320723, rs121908862, rs121908863, rs121908865, rs121908866, rs121908867, rs121908870, rs121908871, rs121908872, rs2140110277, rs121908881, rs121908884, rs121908885, rs786205080, rs1586182912
View all (22 more)
Mental retardation Severe intellectual disability, Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
1281988
Associations from Text Mining
Disease Name Relationship Type References
AIDS Dementia Complex Associate 3258005
Body Weight Associate 23839870
Breast Neoplasms Associate 26204487
Carotid Stenosis Associate 21607540
Colorectal Neoplasms Inhibit 23965968
Fucosidosis Associate 27706744, 2903667, 2903668, 33435586, 33906529, 34425818, 36082656, 39865383, 8097260, 9039984
Intestinal Neoplasms Associate 26998741
Krause Kivlin syndrome Associate 9039984
Lysosomal Storage Diseases Associate 31603145
Malformations of Cortical Development Associate 39865383