Gene Gene information from NCBI Gene database.
Entrez ID 2516
Gene name Nuclear receptor subfamily 5 group A member 1
Gene symbol NR5A1
Synonyms (NCBI Gene)
AD4BPELPFTZ1FTZF1POF7SF-1SF1SPGF8SRXX4SRXY3hSF-1
Chromosome 9
Chromosome location 9q33.3
Summary The protein encoded by this gene is a transcriptional activator involved in sex determination. The encoded protein binds DNA as a monomer. Defects in this gene are a cause of XY sex reversal with or without adrenal failure as well as adrenocortical insuff
SNPs SNP information provided by dbSNP.
32
SNP ID Visualize variation Clinical significance Consequence
rs104894118 C>A,T Pathogenic Coding sequence variant, missense variant
rs104894119 C>T Pathogenic Coding sequence variant, missense variant
rs104894120 A>T Pathogenic Coding sequence variant, missense variant
rs104894123 G>A,T Pathogenic Coding sequence variant, synonymous variant, stop gained
rs104894124 C>T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
53
miRTarBase ID miRNA Experiments Reference
MIRT1192973 hsa-miR-1197 CLIP-seq
MIRT1192974 hsa-miR-1207-5p CLIP-seq
MIRT1192975 hsa-miR-1827 CLIP-seq
MIRT1192976 hsa-miR-1909 CLIP-seq
MIRT1192977 hsa-miR-1910 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
NR0B1 Repression 11990799
SOX9 Activation 11875113
SOX9 Unknown 24591553
SP1 Unknown 9013759
USF2 Unknown 18165439
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
72
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 23610160
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
184757 7983 ENSG00000136931
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13285
Protein name Steroidogenic factor 1 (SF-1) (STF-1) (hSF-1) (Adrenal 4-binding protein) (Fushi tarazu factor homolog 1) (Nuclear receptor subfamily 5 group A member 1) (Steroid hormone receptor Ad4BP)
Protein function Transcriptional activator. Essential for sexual differentiation and formation of the primary steroidogenic tissues (PubMed:27378692). Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21
PDB 1YOW , 1ZDT , 4QJR , 4QK4 , 7KHT , 8DAF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00105 zf-C4 11 80 Zinc finger, C4 type (two domains) Domain
PF00104 Hormone_recep 250 442 Ligand-binding domain of nuclear hormone receptor Domain
Tissue specificity TISSUE SPECIFICITY: High expressed in the adrenal cortex, the ovary, the testis, and the spleen (PubMed:9177385). {ECO:0000269|PubMed:9177385}.
Sequence
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
QRKRCPFCRFQKCLTVGMRL
EAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
LCLVEVRALSMQAKEYLYHKHL
GNEMPRNNLLIEMLQAKQT
Sequence length 461
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cortisol synthesis and secretion
Cushing syndrome
  Nuclear Receptor transcription pathway
SUMOylation of intracellular receptors
Transcriptional regulation of pluripotent stem cells
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
357
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
46,XX sex reversal 4 Pathogenic rs1832447335, rs104894119 RCV001333321
RCV000490544
46,XY disorder of sex development Pathogenic; Likely pathogenic rs2131286914, rs2131289687, rs2131289982, rs1564150329, rs2131289973, rs2131289701, rs2131279850, rs866712684, rs2538665084, rs2538683985, rs2538673493, rs2538674045, rs2538676475, rs2538683958, rs2538687051
View all (13 more)
RCV001389645
RCV001380659
RCV001389147
RCV001919035
RCV001960405
RCV001866528
RCV001939594
RCV003774736
RCV002810611
RCV002871131
RCV003017878
RCV003008127
RCV003032861
RCV003782936
RCV003790460
RCV003792503
RCV003808225
RCV003804512
RCV003801798
RCV002230747
RCV002527576
RCV002233712
RCV002234233
RCV002551723
RCV001056064
RCV001204202
RCV001231093
RCV001232154
46,XY partial gonadal dysgenesis Pathogenic rs2131277756 RCV002254533
46,XY sex reversal 3 Pathogenic; Likely pathogenic rs2131289685, rs1832458239, rs2131289790, rs2131290040, rs1832496590, rs754336683, rs2131289973, rs145936761, rs866712684, rs2131290009, rs2131277629, rs2131277648, rs2131279852, rs2538687191, rs863224904
View all (24 more)
RCV004594362
RCV001726609
RCV001823017
RCV002275228
RCV002275229
RCV002279771
RCV005638167
RCV002251206
RCV002251254
RCV002254390
RCV002272774
RCV002273019
RCV002273145
RCV002472073
RCV000199384
RCV000197157
RCV003128165
RCV003239300
RCV003314441
RCV000013638
RCV000013640
RCV000013641
RCV000013642
RCV000013643
RCV000013644
RCV000013645
RCV000013646
RCV000013647
RCV000013648
RCV000013650
RCV000013652
RCV000013654
RCV004555172
RCV000504282
RCV000502487
RCV000502696
RCV001805860
RCV000824833
RCV000984938
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign rs115601896 RCV005916596
Gastric cancer Benign rs115601896 RCV005916597
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
46 XX Disorders of Sex Development Associate 23918653, 27490115, 27855412, 30350900, 35222615
46 XX Testicular Disorders of Sex Development Associate 23918653, 26492835, 27378692, 27490115
46 XY female Associate 21654157, 25502990, 27553487, 34112222
Acne Vulgaris Associate 12787114
Acromegaly Associate 36497102
Addison Disease Associate 11038323, 23299922, 25989977
Adrenal Cortex Neoplasms Associate 23158211
Adrenal Gland Diseases Associate 24056159, 37432935
Adrenal Gland Neoplasms Associate 18984668, 39623453
Adrenal Insufficiency Associate 11038323, 19318730, 21654157, 22100173, 23096908, 25122490