Gene Gene information from NCBI Gene database.
Entrez ID 23613
Gene name Zinc finger MYND-type containing 8
Gene symbol ZMYND8
Synonyms (NCBI Gene)
PRKCBP1PRO2893RACK7
Chromosome 20
Chromosome location 20q13.12
Summary The protein encoded by this gene is a receptor for activated C-kinase (RACK) protein. The encoded protein has been shown to bind in vitro to activated protein kinase C beta I. In addition, this protein is a cutaneous T-cell lymphoma-associated antigen. Fi
miRNA miRNA information provided by mirtarbase database.
342
miRTarBase ID miRNA Experiments Reference
MIRT050675 hsa-miR-18a-5p CLASH 23622248
MIRT049407 hsa-miR-92a-3p CLASH 23622248
MIRT039404 hsa-miR-421 CLASH 23622248
MIRT037778 hsa-miR-548d-5p CLASH 23622248
MIRT615847 hsa-miR-3140-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
41
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 25593309
GO:0000724 Process Double-strand break repair via homologous recombination IMP 25593309
GO:0000785 Component Chromatin IDA 25593309, 26655721, 27732854, 30134174, 36064715
GO:0003714 Function Transcription corepressor activity IBA
GO:0003714 Function Transcription corepressor activity IMP 27477906, 33323928
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615713 9397 ENSG00000101040
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9ULU4
Protein name MYND-type zinc finger-containing chromatin reader ZMYND8 (Cutaneous T-cell lymphoma-associated antigen se14-3) (CTCL-associated antigen se14-3) (Protein kinase C-binding protein 1) (Rack7) (Transcription coregulator ZMYND8) (Zinc finger MYND domain-contai
Protein function Chromatin reader that recognizes dual histone modifications such as histone H3.1 dimethylated at 'Lys-36' and histone H4 acetylated at 'Lys-16' (H3.1K36me2-H4K16ac) and histone H3 methylated at 'Lys-4' and histone H4 acetylated at 'Lys-14' (H3K4
PDB 4COS , 5B73 , 5MQ4 , 5Y1Z , 7CWH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00439 Bromodomain 157 240 Bromodomain Domain
PF00855 PWWP 275 351 PWWP domain Domain
PF12064 DUF3544 413 620 Protein kinase C-binding protein 1 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in neurons (at protein level) (PubMed:36064715). Absent in astrocytes (at protein level) (PubMed:36064715). Expressed in all tissues examined with highest expression in brain, lung, pancreas, and placenta (PubMed:11003709, Pu
Sequence
MDISTRSKDPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSE
LRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLRLTSE
PEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLE
QHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKV

VIKICEHEMNEIEVCPECYLAACQKRDNWFCEPCSNPHPLVWAKLKGFPFWPAKALRDKD
GQVDARFFGQHDRAWVPINNCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVE
NIRRKFGVF
NYSPFRTPYTPNSQYQMLLDPTNPSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGT
GRRISLSDMPRSPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPASTK
TGQAGSLSGSPKPFSPQLSAPITTKTDKTSTTGSILNLNLDRSKAEMDLKELSESVQQQS
TPVPLISPKRQIRSRFQLNLDKTIESCKAQLGINEISEDVYTAVEHSDSEDSEKSDSSDS
EYISDDEQKSKNEPEDTEDK
EGCQMDKEPSAVKKKPKPTNPVEIKEELKSTSPASEKADP
GAVKDKASPEPEKDFSEKAKPSPHPIKDKLKGKDETDSPTVHLGLDSDSESELVIDLGED
HSGREGRKNKKEPKEPSPKQDVVGKTPPSTTVGSHSPPETPVLTRSSAQTSAAGATATTS
TSSTVTVTAPAPAATGSPVKKQRPLLPKETAPAVQRVVWNSSSKFQTSSQKWHMQKMQRQ
QQQQQQQNQQQQPQSSQGTRYQTRQAVKAVQQKEITQSPSTSTITLVTSTQSSPLVTSSG
SMSTLVSSVNADLPIATASADVAADIAKYTSKMMDAIKGTMTEIYNDLSKNTTGSTIAEI
RRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVD
ETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQSATAPQQEADAEVNTE
TLNKSSQGSSSSTQSAPSETASASKEKETSAEKSKESGSTLDLSGSRETPSSILLGSNQG
SDHSRSNKSSWSSSDEKRGSTRSDHNTSTSTKSLLPKESRLDTFWD
Sequence length 1186
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
9
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Neurodevelopmental disorder Pathogenic rs776813452 RCV003592053
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Intellectual disability Uncertain significance rs1135401783 RCV000496152
See cases Uncertain significance rs2147190350 RCV002252836
ZMYND8-associated neurodevelopmental disorder Uncertain significance rs776813452 RCV003885426
ZMYND8-related disorder Uncertain significance; Likely benign rs757483496, rs373180222, rs1406141169, rs776813452, rs144592314 RCV003406258
RCV003422421
RCV003397525
RCV004755029
RCV003959003
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Breast Neoplasms Associate 28055972, 30952871, 33593912
Carcinoma Renal Cell Stimulate 33593912
Colorectal Neoplasms Associate 32224527
Disease Associate 36153585
Endometriosis Associate 36153585
Glioblastoma Associate 32832624
Glioma Associate 36692427, 36826993
Leukemia Associate 34358447
Leukemia Myeloid Acute Associate 23667654, 34358447, 34478652
Neoplasms Associate 29393731, 30952871, 32224527, 32832624, 33593912, 36153585