Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	23339
Gene name Gene Name - the full gene name approved by the HGNC.	VPS39 subunit of HOPS complex
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	VPS39
Synonyms (NCBI Gene) Gene synonyms aliases	TLP, VAM6, hVam6p
Chromosome Chromosome number	15
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	15q15.1
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes a protein that may promote clustering and fusion of late endosomes and lysosomes. The protein may also act as an adaptor protein that modulates the transforming growth factor-beta response by coupling the transforming growth factor-beta

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miRTarBase ID	miRNA	Experiments	Reference
MIRT001579	hsa-let-7b-5p	pSILAC	18668040
MIRT017323	hsa-miR-335-5p	Microarray	18185580
MIRT001579	hsa-let-7b-5p	Proteomics;Other	18668040
MIRT039334	hsa-miR-425-5p	CLASH	23622248
MIRT458722	hsa-miR-9500	PAR-CLIP	23592263
MIRT458721	hsa-miR-211-3p	PAR-CLIP	23592263
MIRT458720	hsa-miR-4270	PAR-CLIP	23592263
MIRT458719	hsa-miR-4441	PAR-CLIP	23592263
MIRT458718	hsa-miR-6754-5p	PAR-CLIP	23592263
MIRT458716	hsa-miR-4795-5p	PAR-CLIP	23592263
MIRT458717	hsa-miR-5702	PAR-CLIP	23592263
MIRT458715	hsa-miR-185-5p	PAR-CLIP	23592263
MIRT458714	hsa-miR-4306	PAR-CLIP	23592263
MIRT458713	hsa-miR-4644	PAR-CLIP	23592263
MIRT458712	hsa-miR-6878-5p	PAR-CLIP	23592263
MIRT458711	hsa-miR-6731-5p	PAR-CLIP	23592263
MIRT458710	hsa-miR-8085	PAR-CLIP	23592263
MIRT458709	hsa-miR-1233-5p	PAR-CLIP	23592263
MIRT458708	hsa-miR-6778-5p	PAR-CLIP	23592263
MIRT458707	hsa-miR-30c-1-3p	PAR-CLIP	23592263
MIRT458706	hsa-miR-30c-2-3p	PAR-CLIP	23592263
MIRT458705	hsa-miR-6788-5p	PAR-CLIP	23592263
MIRT458722	hsa-miR-9500	PAR-CLIP	23592263
MIRT458721	hsa-miR-211-3p	PAR-CLIP	23592263
MIRT458720	hsa-miR-4270	PAR-CLIP	23592263
MIRT458719	hsa-miR-4441	PAR-CLIP	23592263
MIRT458718	hsa-miR-6754-5p	PAR-CLIP	23592263
MIRT458716	hsa-miR-4795-5p	PAR-CLIP	23592263
MIRT458717	hsa-miR-5702	PAR-CLIP	23592263
MIRT458715	hsa-miR-185-5p	PAR-CLIP	23592263
MIRT458714	hsa-miR-4306	PAR-CLIP	23592263
MIRT458713	hsa-miR-4644	PAR-CLIP	23592263
MIRT458712	hsa-miR-6878-5p	PAR-CLIP	23592263
MIRT458711	hsa-miR-6731-5p	PAR-CLIP	23592263
MIRT458710	hsa-miR-8085	PAR-CLIP	23592263
MIRT458709	hsa-miR-1233-5p	PAR-CLIP	23592263
MIRT458708	hsa-miR-6778-5p	PAR-CLIP	23592263
MIRT458707	hsa-miR-30c-1-3p	PAR-CLIP	23592263
MIRT458706	hsa-miR-30c-2-3p	PAR-CLIP	23592263
MIRT458705	hsa-miR-6788-5p	PAR-CLIP	23592263
MIRT1486833	hsa-miR-1299	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT1486835	hsa-miR-197	CLIP-seq
MIRT1486836	hsa-miR-2964a-3p	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT1486839	hsa-miR-3200-3p	CLIP-seq
MIRT1486840	hsa-miR-326	CLIP-seq
MIRT1486841	hsa-miR-330-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT1486845	hsa-miR-409-5p	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT1486847	hsa-miR-4424	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT1486849	hsa-miR-4452	CLIP-seq
MIRT1486850	hsa-miR-4464	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486853	hsa-miR-4504	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT1486857	hsa-miR-4720-3p	CLIP-seq
MIRT1486858	hsa-miR-4724-3p	CLIP-seq
MIRT1486859	hsa-miR-4730	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT1486861	hsa-miR-4748	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT1486864	hsa-miR-4795-3p	CLIP-seq
MIRT1486865	hsa-miR-4803	CLIP-seq
MIRT1486866	hsa-miR-4804-3p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT1486870	hsa-miR-539	CLIP-seq
MIRT1486871	hsa-miR-542-3p	CLIP-seq
MIRT1486872	hsa-miR-578	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT1486874	hsa-miR-758	CLIP-seq
MIRT1486875	hsa-miR-875-3p	CLIP-seq
MIRT2146495	hsa-miR-1825	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT2146496	hsa-miR-199a-5p	CLIP-seq
MIRT2146497	hsa-miR-199b-5p	CLIP-seq
MIRT2146498	hsa-miR-3065-3p	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2146499	hsa-miR-3173-3p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2146500	hsa-miR-3622b-5p	CLIP-seq
MIRT2146501	hsa-miR-3690	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2146502	hsa-miR-3925-3p	CLIP-seq
MIRT2146503	hsa-miR-3977	CLIP-seq
MIRT2146504	hsa-miR-4254	CLIP-seq
MIRT2146505	hsa-miR-4268	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT2146506	hsa-miR-4428	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT2146507	hsa-miR-4448	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2146508	hsa-miR-4519	CLIP-seq
MIRT2146509	hsa-miR-4662a-3p	CLIP-seq
MIRT2146510	hsa-miR-4676-5p	CLIP-seq
MIRT2146511	hsa-miR-4685-5p	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2146512	hsa-miR-4786-5p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT1486865	hsa-miR-4803	CLIP-seq
MIRT2146513	hsa-miR-490-5p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT2146514	hsa-miR-548ag	CLIP-seq
MIRT2146515	hsa-miR-548ai	CLIP-seq
MIRT2146516	hsa-miR-575	CLIP-seq
MIRT2146517	hsa-miR-580	CLIP-seq
MIRT2146518	hsa-miR-645	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146519	hsa-miR-7	CLIP-seq
MIRT1486874	hsa-miR-758	CLIP-seq
MIRT2146520	hsa-miR-759	CLIP-seq
MIRT2146521	hsa-miR-765	CLIP-seq
MIRT2146522	hsa-miR-766	CLIP-seq
MIRT2146523	hsa-miR-769-5p	CLIP-seq
MIRT2146524	hsa-miR-934	CLIP-seq
MIRT2367100	hsa-miR-1207-3p	CLIP-seq
MIRT2367101	hsa-miR-1207-5p	CLIP-seq
MIRT2367102	hsa-miR-1322	CLIP-seq
MIRT2367103	hsa-miR-134	CLIP-seq
MIRT2367104	hsa-miR-3118	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2367105	hsa-miR-320e	CLIP-seq
MIRT2367106	hsa-miR-339-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2367107	hsa-miR-3611	CLIP-seq
MIRT2367108	hsa-miR-3664-3p	CLIP-seq
MIRT2367109	hsa-miR-3672	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT2367111	hsa-miR-3714	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2367112	hsa-miR-3918	CLIP-seq
MIRT2146505	hsa-miR-4268	CLIP-seq
MIRT2367113	hsa-miR-4287	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT2367114	hsa-miR-4435	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT2146507	hsa-miR-4448	CLIP-seq
MIRT2367115	hsa-miR-4469	CLIP-seq
MIRT2367116	hsa-miR-4476	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2367117	hsa-miR-4639-3p	CLIP-seq
MIRT2367118	hsa-miR-4643	CLIP-seq
MIRT2367119	hsa-miR-4685-3p	CLIP-seq
MIRT2146511	hsa-miR-4685-5p	CLIP-seq
MIRT2367120	hsa-miR-4717-3p	CLIP-seq
MIRT2367121	hsa-miR-4731-5p	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT2367122	hsa-miR-4760-3p	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2367123	hsa-miR-4763-3p	CLIP-seq
MIRT2367124	hsa-miR-515-5p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT2367125	hsa-miR-548a-3p	CLIP-seq
MIRT2367126	hsa-miR-548e	CLIP-seq
MIRT2367127	hsa-miR-548f	CLIP-seq
MIRT2367128	hsa-miR-548q	CLIP-seq
MIRT2367129	hsa-miR-592	CLIP-seq
MIRT2367130	hsa-miR-597	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146520	hsa-miR-759	CLIP-seq
MIRT2367131	hsa-miR-885-3p	CLIP-seq
MIRT2367132	hsa-miR-940	CLIP-seq
MIRT2463293	hsa-miR-2116	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT2463294	hsa-miR-4313	CLIP-seq
MIRT2463295	hsa-miR-4677-5p	CLIP-seq
MIRT2367101	hsa-miR-1207-5p	CLIP-seq
MIRT2660521	hsa-miR-1266	CLIP-seq
MIRT2660522	hsa-miR-1285	CLIP-seq
MIRT2660523	hsa-miR-1471	CLIP-seq
MIRT2146495	hsa-miR-1825	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT2660524	hsa-miR-1909	CLIP-seq
MIRT2660525	hsa-miR-1914	CLIP-seq
MIRT1486835	hsa-miR-197	CLIP-seq
MIRT2660526	hsa-miR-1972	CLIP-seq
MIRT2146496	hsa-miR-199a-5p	CLIP-seq
MIRT2146497	hsa-miR-199b-5p	CLIP-seq
MIRT2463293	hsa-miR-2116	CLIP-seq
MIRT2660527	hsa-miR-2117	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT2660528	hsa-miR-3128	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2660529	hsa-miR-3141	CLIP-seq
MIRT2660530	hsa-miR-3187-5p	CLIP-seq
MIRT2660531	hsa-miR-3189-5p	CLIP-seq
MIRT1486839	hsa-miR-3200-3p	CLIP-seq
MIRT2660532	hsa-miR-342-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2660533	hsa-miR-3614-5p	CLIP-seq
MIRT2367108	hsa-miR-3664-3p	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2660534	hsa-miR-384	CLIP-seq
MIRT2660535	hsa-miR-3907	CLIP-seq
MIRT2146502	hsa-miR-3925-3p	CLIP-seq
MIRT2660536	hsa-miR-3938	CLIP-seq
MIRT2146503	hsa-miR-3977	CLIP-seq
MIRT2660537	hsa-miR-4273	CLIP-seq
MIRT2463294	hsa-miR-4313	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT1486847	hsa-miR-4424	CLIP-seq
MIRT2146506	hsa-miR-4428	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT1486850	hsa-miR-4464	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2660538	hsa-miR-4518	CLIP-seq
MIRT2660539	hsa-miR-4523	CLIP-seq
MIRT2660540	hsa-miR-4658	CLIP-seq
MIRT2660541	hsa-miR-4664-5p	CLIP-seq
MIRT2660542	hsa-miR-4672	CLIP-seq
MIRT2463295	hsa-miR-4677-5p	CLIP-seq
MIRT2660543	hsa-miR-4680-5p	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT2660544	hsa-miR-4717-5p	CLIP-seq
MIRT1486857	hsa-miR-4720-3p	CLIP-seq
MIRT2660545	hsa-miR-4720-5p	CLIP-seq
MIRT1486858	hsa-miR-4724-3p	CLIP-seq
MIRT1486859	hsa-miR-4730	CLIP-seq
MIRT2367121	hsa-miR-4731-5p	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT2660546	hsa-miR-4738-3p	CLIP-seq
MIRT2660547	hsa-miR-4742-3p	CLIP-seq
MIRT1486861	hsa-miR-4748	CLIP-seq
MIRT2660548	hsa-miR-4758-3p	CLIP-seq
MIRT2660549	hsa-miR-4758-5p	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2367123	hsa-miR-4763-3p	CLIP-seq
MIRT2660550	hsa-miR-4768-5p	CLIP-seq
MIRT2146512	hsa-miR-4786-5p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT2660551	hsa-miR-4799-3p	CLIP-seq
MIRT1486866	hsa-miR-4804-3p	CLIP-seq
MIRT2146513	hsa-miR-490-5p	CLIP-seq
MIRT2660552	hsa-miR-508-5p	CLIP-seq
MIRT2660553	hsa-miR-512-3p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT1486870	hsa-miR-539	CLIP-seq
MIRT2367125	hsa-miR-548a-3p	CLIP-seq
MIRT2367126	hsa-miR-548e	CLIP-seq
MIRT2367127	hsa-miR-548f	CLIP-seq
MIRT2660554	hsa-miR-548g	CLIP-seq
MIRT2660555	hsa-miR-550a	CLIP-seq
MIRT2660556	hsa-miR-570	CLIP-seq
MIRT2660557	hsa-miR-612	CLIP-seq
MIRT2660558	hsa-miR-630	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146522	hsa-miR-766	CLIP-seq
MIRT2660559	hsa-miR-767-5p	CLIP-seq
MIRT2146523	hsa-miR-769-5p	CLIP-seq
MIRT2660560	hsa-miR-873	CLIP-seq
MIRT2367131	hsa-miR-885-3p	CLIP-seq
MIRT2660561	hsa-miR-935	CLIP-seq
MIRT2367101	hsa-miR-1207-5p	CLIP-seq
MIRT2660521	hsa-miR-1266	CLIP-seq
MIRT2660522	hsa-miR-1285	CLIP-seq
MIRT2660523	hsa-miR-1471	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT2660524	hsa-miR-1909	CLIP-seq
MIRT2660525	hsa-miR-1914	CLIP-seq
MIRT1486835	hsa-miR-197	CLIP-seq
MIRT2660526	hsa-miR-1972	CLIP-seq
MIRT2463293	hsa-miR-2116	CLIP-seq
MIRT2660527	hsa-miR-2117	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT2660528	hsa-miR-3128	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2660529	hsa-miR-3141	CLIP-seq
MIRT2660530	hsa-miR-3187-5p	CLIP-seq
MIRT2660531	hsa-miR-3189-5p	CLIP-seq
MIRT1486839	hsa-miR-3200-3p	CLIP-seq
MIRT2660532	hsa-miR-342-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2367108	hsa-miR-3664-3p	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2660534	hsa-miR-384	CLIP-seq
MIRT2660535	hsa-miR-3907	CLIP-seq
MIRT2660536	hsa-miR-3938	CLIP-seq
MIRT2146503	hsa-miR-3977	CLIP-seq
MIRT2660537	hsa-miR-4273	CLIP-seq
MIRT2463294	hsa-miR-4313	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT1486847	hsa-miR-4424	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT1486850	hsa-miR-4464	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2660538	hsa-miR-4518	CLIP-seq
MIRT2660539	hsa-miR-4523	CLIP-seq
MIRT2660540	hsa-miR-4658	CLIP-seq
MIRT2660541	hsa-miR-4664-5p	CLIP-seq
MIRT2660542	hsa-miR-4672	CLIP-seq
MIRT2463295	hsa-miR-4677-5p	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT2660544	hsa-miR-4717-5p	CLIP-seq
MIRT1486857	hsa-miR-4720-3p	CLIP-seq
MIRT2660545	hsa-miR-4720-5p	CLIP-seq
MIRT1486858	hsa-miR-4724-3p	CLIP-seq
MIRT1486859	hsa-miR-4730	CLIP-seq
MIRT2367121	hsa-miR-4731-5p	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT2660546	hsa-miR-4738-3p	CLIP-seq
MIRT2660547	hsa-miR-4742-3p	CLIP-seq
MIRT1486861	hsa-miR-4748	CLIP-seq
MIRT2660548	hsa-miR-4758-3p	CLIP-seq
MIRT2660549	hsa-miR-4758-5p	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2367123	hsa-miR-4763-3p	CLIP-seq
MIRT2660550	hsa-miR-4768-5p	CLIP-seq
MIRT2146512	hsa-miR-4786-5p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT2660551	hsa-miR-4799-3p	CLIP-seq
MIRT1486866	hsa-miR-4804-3p	CLIP-seq
MIRT2146513	hsa-miR-490-5p	CLIP-seq
MIRT2660552	hsa-miR-508-5p	CLIP-seq
MIRT2660553	hsa-miR-512-3p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT1486870	hsa-miR-539	CLIP-seq
MIRT2367125	hsa-miR-548a-3p	CLIP-seq
MIRT2367126	hsa-miR-548e	CLIP-seq
MIRT2367127	hsa-miR-548f	CLIP-seq
MIRT2660554	hsa-miR-548g	CLIP-seq
MIRT2660555	hsa-miR-550a	CLIP-seq
MIRT2660556	hsa-miR-570	CLIP-seq
MIRT2660557	hsa-miR-612	CLIP-seq
MIRT2660558	hsa-miR-630	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146522	hsa-miR-766	CLIP-seq
MIRT2660559	hsa-miR-767-5p	CLIP-seq
MIRT2146523	hsa-miR-769-5p	CLIP-seq
MIRT2660560	hsa-miR-873	CLIP-seq
MIRT2660561	hsa-miR-935	CLIP-seq

Show/Hide all(16)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	31806350
GO:0005737	Component	Cytoplasm	IBA	21873635
GO:0005765	Component	Lysosomal membrane	HDA	17897319
GO:0005765	Component	Lysosomal membrane	IDA	23167963
GO:0006886	Process	Intracellular protein transport	IEA
GO:0006914	Process	Autophagy	IBA	21873635
GO:0006914	Process	Autophagy	IMP	24554770
GO:0008333	Process	Endosome to lysosome transport	IMP	25266290, 25783203
GO:0016020	Component	Membrane	IBA	21873635
GO:0030123	Component	AP-3 adaptor complex	IEA
GO:0030897	Component	HOPS complex	IDA	19109425, 23901104
GO:0031902	Component	Late endosome membrane	IDA	23167963
GO:0034058	Process	Endosomal vesicle fusion	IBA	21873635
GO:0034058	Process	Endosomal vesicle fusion	IDA	23167963
GO:1902774	Process	Late endosome to lysosome transport	IDA	23167963
GO:1990126	Process	Retrograde transport, endosome to plasma membrane	IMP	25266290

MIM	HGNC	e!Ensembl
612188	20593	ENSG00000166887

Protein

UniProt ID

Q96JC1

Protein name

Vam6/Vps39-like protein (TRAP1-like protein) (hVam6p)

Protein function

Regulator of TGF-beta/activin signaling, inhibiting SMAD3- and activating SMAD2-dependent transcription. Acts by interfering with SMAD3/SMAD4 complex formation, this would lead to inhibition of SMAD3-dependent transcription and relieve SMAD3 inh

PDB

6ZE9

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00780	CNH	20 → 291	CNH domain	Family
PF10366	Vps39_1	460 → 562	Vacuolar sorting protein 39 domain 1	Family
PF10367	Vps39_2	772 → 880	Vacuolar sorting protein 39 domain 2	Domain

Tissue specificity

TISSUE SPECIFICITY: Widely expressed, with highest levels in heart, skeletal muscle, kidney, pancreas, brain, placenta and spleen. {ECO:0000269|PubMed:11448994, ECO:0000269|PubMed:12941698}.

Sequence

MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLA
IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS
KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT

Sequence length

886

Interactions

View interactions

	KEGG
	Autophagy - animal Efferocytosis Salmonella infection

Show/Hide Causal Diseases (4)

Disease term	Disease name	dbSNP ID	References
Causal
Breast cancer	Malignant neoplasm of breast	rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158 View all (309 more)	21466612
Breast carcinoma	Breast Carcinoma	rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451 View all (71 more)	21466612
Marfan syndrome	Mammary Carcinoma, Human	rs137854456, rs137854457, rs267606796, rs137854458, rs137854459, rs137854460, rs137854470, rs137854471, rs267606797, rs137854461, rs137854462, rs137854463, rs869025419, rs137854464, rs137854465 View all (942 more)	21466612
Schizophrenia	Schizophrenia	rs13447324, rs387906932, rs387906933, rs863223354, rs863223355, rs776061422, rs863223349, rs748809996, rs759748655, rs863223353, rs863223350, rs863223356, rs781821239, rs863223348, rs863223346 View all (12 more)	23042115

Show/Hide Text Mining Associations (2)

Disease Name	Relationship Type	References
Associations from Text Mining
Carcinoma Merkel Cell	Associate	21454559, 35336880
Retinoblastoma	Associate	21454559

VPS39 (VPS39 subunit of HOPS complex)