Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	23339
Gene name Gene Name - the full gene name approved by the HGNC.	VPS39 subunit of HOPS complex
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	VPS39
Synonyms (NCBI Gene) Gene synonyms aliases	TLP, VAM6, hVam6p
Chromosome Chromosome number	15
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	15q15.1
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes a protein that may promote clustering and fusion of late endosomes and lysosomes. The protein may also act as an adaptor protein that modulates the transforming growth factor-beta response by coupling the transforming growth factor-beta

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miRTarBase ID	miRNA	Experiments	Reference
MIRT001579	hsa-let-7b-5p	pSILAC	18668040
MIRT017323	hsa-miR-335-5p	Microarray	18185580
MIRT001579	hsa-let-7b-5p	Proteomics;Other	18668040
MIRT039334	hsa-miR-425-5p	CLASH	23622248
MIRT458722	hsa-miR-9500	PAR-CLIP	23592263
MIRT458721	hsa-miR-211-3p	PAR-CLIP	23592263
MIRT458720	hsa-miR-4270	PAR-CLIP	23592263
MIRT458719	hsa-miR-4441	PAR-CLIP	23592263
MIRT458718	hsa-miR-6754-5p	PAR-CLIP	23592263
MIRT458716	hsa-miR-4795-5p	PAR-CLIP	23592263
MIRT458717	hsa-miR-5702	PAR-CLIP	23592263
MIRT458715	hsa-miR-185-5p	PAR-CLIP	23592263
MIRT458714	hsa-miR-4306	PAR-CLIP	23592263
MIRT458713	hsa-miR-4644	PAR-CLIP	23592263
MIRT458712	hsa-miR-6878-5p	PAR-CLIP	23592263
MIRT458711	hsa-miR-6731-5p	PAR-CLIP	23592263
MIRT458710	hsa-miR-8085	PAR-CLIP	23592263
MIRT458709	hsa-miR-1233-5p	PAR-CLIP	23592263
MIRT458708	hsa-miR-6778-5p	PAR-CLIP	23592263
MIRT458707	hsa-miR-30c-1-3p	PAR-CLIP	23592263
MIRT458706	hsa-miR-30c-2-3p	PAR-CLIP	23592263
MIRT458705	hsa-miR-6788-5p	PAR-CLIP	23592263
MIRT458722	hsa-miR-9500	PAR-CLIP	23592263
MIRT458721	hsa-miR-211-3p	PAR-CLIP	23592263
MIRT458720	hsa-miR-4270	PAR-CLIP	23592263
MIRT458719	hsa-miR-4441	PAR-CLIP	23592263
MIRT458718	hsa-miR-6754-5p	PAR-CLIP	23592263
MIRT458716	hsa-miR-4795-5p	PAR-CLIP	23592263
MIRT458717	hsa-miR-5702	PAR-CLIP	23592263
MIRT458715	hsa-miR-185-5p	PAR-CLIP	23592263
MIRT458714	hsa-miR-4306	PAR-CLIP	23592263
MIRT458713	hsa-miR-4644	PAR-CLIP	23592263
MIRT458712	hsa-miR-6878-5p	PAR-CLIP	23592263
MIRT458711	hsa-miR-6731-5p	PAR-CLIP	23592263
MIRT458710	hsa-miR-8085	PAR-CLIP	23592263
MIRT458709	hsa-miR-1233-5p	PAR-CLIP	23592263
MIRT458708	hsa-miR-6778-5p	PAR-CLIP	23592263
MIRT458707	hsa-miR-30c-1-3p	PAR-CLIP	23592263
MIRT458706	hsa-miR-30c-2-3p	PAR-CLIP	23592263
MIRT458705	hsa-miR-6788-5p	PAR-CLIP	23592263
MIRT1486833	hsa-miR-1299	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT1486835	hsa-miR-197	CLIP-seq
MIRT1486836	hsa-miR-2964a-3p	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT1486839	hsa-miR-3200-3p	CLIP-seq
MIRT1486840	hsa-miR-326	CLIP-seq
MIRT1486841	hsa-miR-330-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT1486845	hsa-miR-409-5p	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT1486847	hsa-miR-4424	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT1486849	hsa-miR-4452	CLIP-seq
MIRT1486850	hsa-miR-4464	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486853	hsa-miR-4504	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT1486857	hsa-miR-4720-3p	CLIP-seq
MIRT1486858	hsa-miR-4724-3p	CLIP-seq
MIRT1486859	hsa-miR-4730	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT1486861	hsa-miR-4748	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT1486864	hsa-miR-4795-3p	CLIP-seq
MIRT1486865	hsa-miR-4803	CLIP-seq
MIRT1486866	hsa-miR-4804-3p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT1486870	hsa-miR-539	CLIP-seq
MIRT1486871	hsa-miR-542-3p	CLIP-seq
MIRT1486872	hsa-miR-578	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT1486874	hsa-miR-758	CLIP-seq
MIRT1486875	hsa-miR-875-3p	CLIP-seq
MIRT2146495	hsa-miR-1825	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT2146496	hsa-miR-199a-5p	CLIP-seq
MIRT2146497	hsa-miR-199b-5p	CLIP-seq
MIRT2146498	hsa-miR-3065-3p	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2146499	hsa-miR-3173-3p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2146500	hsa-miR-3622b-5p	CLIP-seq
MIRT2146501	hsa-miR-3690	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2146502	hsa-miR-3925-3p	CLIP-seq
MIRT2146503	hsa-miR-3977	CLIP-seq
MIRT2146504	hsa-miR-4254	CLIP-seq
MIRT2146505	hsa-miR-4268	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT2146506	hsa-miR-4428	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT2146507	hsa-miR-4448	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2146508	hsa-miR-4519	CLIP-seq
MIRT2146509	hsa-miR-4662a-3p	CLIP-seq
MIRT2146510	hsa-miR-4676-5p	CLIP-seq
MIRT2146511	hsa-miR-4685-5p	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2146512	hsa-miR-4786-5p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT1486865	hsa-miR-4803	CLIP-seq
MIRT2146513	hsa-miR-490-5p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT2146514	hsa-miR-548ag	CLIP-seq
MIRT2146515	hsa-miR-548ai	CLIP-seq
MIRT2146516	hsa-miR-575	CLIP-seq
MIRT2146517	hsa-miR-580	CLIP-seq
MIRT2146518	hsa-miR-645	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146519	hsa-miR-7	CLIP-seq
MIRT1486874	hsa-miR-758	CLIP-seq
MIRT2146520	hsa-miR-759	CLIP-seq
MIRT2146521	hsa-miR-765	CLIP-seq
MIRT2146522	hsa-miR-766	CLIP-seq
MIRT2146523	hsa-miR-769-5p	CLIP-seq
MIRT2146524	hsa-miR-934	CLIP-seq
MIRT2367100	hsa-miR-1207-3p	CLIP-seq
MIRT2367101	hsa-miR-1207-5p	CLIP-seq
MIRT2367102	hsa-miR-1322	CLIP-seq
MIRT2367103	hsa-miR-134	CLIP-seq
MIRT2367104	hsa-miR-3118	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2367105	hsa-miR-320e	CLIP-seq
MIRT2367106	hsa-miR-339-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2367107	hsa-miR-3611	CLIP-seq
MIRT2367108	hsa-miR-3664-3p	CLIP-seq
MIRT2367109	hsa-miR-3672	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT2367111	hsa-miR-3714	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2367112	hsa-miR-3918	CLIP-seq
MIRT2146505	hsa-miR-4268	CLIP-seq
MIRT2367113	hsa-miR-4287	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT2367114	hsa-miR-4435	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT2146507	hsa-miR-4448	CLIP-seq
MIRT2367115	hsa-miR-4469	CLIP-seq
MIRT2367116	hsa-miR-4476	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2367117	hsa-miR-4639-3p	CLIP-seq
MIRT2367118	hsa-miR-4643	CLIP-seq
MIRT2367119	hsa-miR-4685-3p	CLIP-seq
MIRT2146511	hsa-miR-4685-5p	CLIP-seq
MIRT2367120	hsa-miR-4717-3p	CLIP-seq
MIRT2367121	hsa-miR-4731-5p	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT2367122	hsa-miR-4760-3p	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2367123	hsa-miR-4763-3p	CLIP-seq
MIRT2367124	hsa-miR-515-5p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT2367125	hsa-miR-548a-3p	CLIP-seq
MIRT2367126	hsa-miR-548e	CLIP-seq
MIRT2367127	hsa-miR-548f	CLIP-seq
MIRT2367128	hsa-miR-548q	CLIP-seq
MIRT2367129	hsa-miR-592	CLIP-seq
MIRT2367130	hsa-miR-597	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146520	hsa-miR-759	CLIP-seq
MIRT2367131	hsa-miR-885-3p	CLIP-seq
MIRT2367132	hsa-miR-940	CLIP-seq
MIRT2463293	hsa-miR-2116	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT2463294	hsa-miR-4313	CLIP-seq
MIRT2463295	hsa-miR-4677-5p	CLIP-seq
MIRT2367101	hsa-miR-1207-5p	CLIP-seq
MIRT2660521	hsa-miR-1266	CLIP-seq
MIRT2660522	hsa-miR-1285	CLIP-seq
MIRT2660523	hsa-miR-1471	CLIP-seq
MIRT2146495	hsa-miR-1825	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT2660524	hsa-miR-1909	CLIP-seq
MIRT2660525	hsa-miR-1914	CLIP-seq
MIRT1486835	hsa-miR-197	CLIP-seq
MIRT2660526	hsa-miR-1972	CLIP-seq
MIRT2146496	hsa-miR-199a-5p	CLIP-seq
MIRT2146497	hsa-miR-199b-5p	CLIP-seq
MIRT2463293	hsa-miR-2116	CLIP-seq
MIRT2660527	hsa-miR-2117	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT2660528	hsa-miR-3128	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2660529	hsa-miR-3141	CLIP-seq
MIRT2660530	hsa-miR-3187-5p	CLIP-seq
MIRT2660531	hsa-miR-3189-5p	CLIP-seq
MIRT1486839	hsa-miR-3200-3p	CLIP-seq
MIRT2660532	hsa-miR-342-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2660533	hsa-miR-3614-5p	CLIP-seq
MIRT2367108	hsa-miR-3664-3p	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2660534	hsa-miR-384	CLIP-seq
MIRT2660535	hsa-miR-3907	CLIP-seq
MIRT2146502	hsa-miR-3925-3p	CLIP-seq
MIRT2660536	hsa-miR-3938	CLIP-seq
MIRT2146503	hsa-miR-3977	CLIP-seq
MIRT2660537	hsa-miR-4273	CLIP-seq
MIRT2463294	hsa-miR-4313	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT1486847	hsa-miR-4424	CLIP-seq
MIRT2146506	hsa-miR-4428	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT1486850	hsa-miR-4464	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2660538	hsa-miR-4518	CLIP-seq
MIRT2660539	hsa-miR-4523	CLIP-seq
MIRT2660540	hsa-miR-4658	CLIP-seq
MIRT2660541	hsa-miR-4664-5p	CLIP-seq
MIRT2660542	hsa-miR-4672	CLIP-seq
MIRT2463295	hsa-miR-4677-5p	CLIP-seq
MIRT2660543	hsa-miR-4680-5p	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT2660544	hsa-miR-4717-5p	CLIP-seq
MIRT1486857	hsa-miR-4720-3p	CLIP-seq
MIRT2660545	hsa-miR-4720-5p	CLIP-seq
MIRT1486858	hsa-miR-4724-3p	CLIP-seq
MIRT1486859	hsa-miR-4730	CLIP-seq
MIRT2367121	hsa-miR-4731-5p	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT2660546	hsa-miR-4738-3p	CLIP-seq
MIRT2660547	hsa-miR-4742-3p	CLIP-seq
MIRT1486861	hsa-miR-4748	CLIP-seq
MIRT2660548	hsa-miR-4758-3p	CLIP-seq
MIRT2660549	hsa-miR-4758-5p	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2367123	hsa-miR-4763-3p	CLIP-seq
MIRT2660550	hsa-miR-4768-5p	CLIP-seq
MIRT2146512	hsa-miR-4786-5p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT2660551	hsa-miR-4799-3p	CLIP-seq
MIRT1486866	hsa-miR-4804-3p	CLIP-seq
MIRT2146513	hsa-miR-490-5p	CLIP-seq
MIRT2660552	hsa-miR-508-5p	CLIP-seq
MIRT2660553	hsa-miR-512-3p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT1486870	hsa-miR-539	CLIP-seq
MIRT2367125	hsa-miR-548a-3p	CLIP-seq
MIRT2367126	hsa-miR-548e	CLIP-seq
MIRT2367127	hsa-miR-548f	CLIP-seq
MIRT2660554	hsa-miR-548g	CLIP-seq
MIRT2660555	hsa-miR-550a	CLIP-seq
MIRT2660556	hsa-miR-570	CLIP-seq
MIRT2660557	hsa-miR-612	CLIP-seq
MIRT2660558	hsa-miR-630	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146522	hsa-miR-766	CLIP-seq
MIRT2660559	hsa-miR-767-5p	CLIP-seq
MIRT2146523	hsa-miR-769-5p	CLIP-seq
MIRT2660560	hsa-miR-873	CLIP-seq
MIRT2367131	hsa-miR-885-3p	CLIP-seq
MIRT2660561	hsa-miR-935	CLIP-seq
MIRT2367101	hsa-miR-1207-5p	CLIP-seq
MIRT2660521	hsa-miR-1266	CLIP-seq
MIRT2660522	hsa-miR-1285	CLIP-seq
MIRT2660523	hsa-miR-1471	CLIP-seq
MIRT1486834	hsa-miR-185	CLIP-seq
MIRT2660524	hsa-miR-1909	CLIP-seq
MIRT2660525	hsa-miR-1914	CLIP-seq
MIRT1486835	hsa-miR-197	CLIP-seq
MIRT2660526	hsa-miR-1972	CLIP-seq
MIRT2463293	hsa-miR-2116	CLIP-seq
MIRT2660527	hsa-miR-2117	CLIP-seq
MIRT1486837	hsa-miR-3126-5p	CLIP-seq
MIRT2660528	hsa-miR-3128	CLIP-seq
MIRT1486838	hsa-miR-3132	CLIP-seq
MIRT2660529	hsa-miR-3141	CLIP-seq
MIRT2660530	hsa-miR-3187-5p	CLIP-seq
MIRT2660531	hsa-miR-3189-5p	CLIP-seq
MIRT1486839	hsa-miR-3200-3p	CLIP-seq
MIRT2660532	hsa-miR-342-5p	CLIP-seq
MIRT1486842	hsa-miR-34a	CLIP-seq
MIRT1486843	hsa-miR-34c-5p	CLIP-seq
MIRT2367108	hsa-miR-3664-3p	CLIP-seq
MIRT2367110	hsa-miR-370	CLIP-seq
MIRT1486844	hsa-miR-377	CLIP-seq
MIRT2660534	hsa-miR-384	CLIP-seq
MIRT2660535	hsa-miR-3907	CLIP-seq
MIRT2660536	hsa-miR-3938	CLIP-seq
MIRT2146503	hsa-miR-3977	CLIP-seq
MIRT2660537	hsa-miR-4273	CLIP-seq
MIRT2463294	hsa-miR-4313	CLIP-seq
MIRT1486846	hsa-miR-4419a	CLIP-seq
MIRT1486847	hsa-miR-4424	CLIP-seq
MIRT1486848	hsa-miR-4436b-3p	CLIP-seq
MIRT1486850	hsa-miR-4464	CLIP-seq
MIRT1486851	hsa-miR-449a	CLIP-seq
MIRT1486852	hsa-miR-449b	CLIP-seq
MIRT1486854	hsa-miR-4510	CLIP-seq
MIRT2660538	hsa-miR-4518	CLIP-seq
MIRT2660539	hsa-miR-4523	CLIP-seq
MIRT2660540	hsa-miR-4658	CLIP-seq
MIRT2660541	hsa-miR-4664-5p	CLIP-seq
MIRT2660542	hsa-miR-4672	CLIP-seq
MIRT2463295	hsa-miR-4677-5p	CLIP-seq
MIRT1486855	hsa-miR-4694-3p	CLIP-seq
MIRT1486856	hsa-miR-4710	CLIP-seq
MIRT2660544	hsa-miR-4717-5p	CLIP-seq
MIRT1486857	hsa-miR-4720-3p	CLIP-seq
MIRT2660545	hsa-miR-4720-5p	CLIP-seq
MIRT1486858	hsa-miR-4724-3p	CLIP-seq
MIRT1486859	hsa-miR-4730	CLIP-seq
MIRT2367121	hsa-miR-4731-5p	CLIP-seq
MIRT1486860	hsa-miR-4736	CLIP-seq
MIRT2660546	hsa-miR-4738-3p	CLIP-seq
MIRT2660547	hsa-miR-4742-3p	CLIP-seq
MIRT1486861	hsa-miR-4748	CLIP-seq
MIRT2660548	hsa-miR-4758-3p	CLIP-seq
MIRT2660549	hsa-miR-4758-5p	CLIP-seq
MIRT1486862	hsa-miR-4761-3p	CLIP-seq
MIRT2367123	hsa-miR-4763-3p	CLIP-seq
MIRT2660550	hsa-miR-4768-5p	CLIP-seq
MIRT2146512	hsa-miR-4786-5p	CLIP-seq
MIRT1486863	hsa-miR-4792	CLIP-seq
MIRT2660551	hsa-miR-4799-3p	CLIP-seq
MIRT1486866	hsa-miR-4804-3p	CLIP-seq
MIRT2146513	hsa-miR-490-5p	CLIP-seq
MIRT2660552	hsa-miR-508-5p	CLIP-seq
MIRT2660553	hsa-miR-512-3p	CLIP-seq
MIRT1486867	hsa-miR-520d-5p	CLIP-seq
MIRT1486868	hsa-miR-522	CLIP-seq
MIRT1486869	hsa-miR-524-5p	CLIP-seq
MIRT1486870	hsa-miR-539	CLIP-seq
MIRT2367125	hsa-miR-548a-3p	CLIP-seq
MIRT2367126	hsa-miR-548e	CLIP-seq
MIRT2367127	hsa-miR-548f	CLIP-seq
MIRT2660554	hsa-miR-548g	CLIP-seq
MIRT2660555	hsa-miR-550a	CLIP-seq
MIRT2660556	hsa-miR-570	CLIP-seq
MIRT2660557	hsa-miR-612	CLIP-seq
MIRT2660558	hsa-miR-630	CLIP-seq
MIRT1486873	hsa-miR-661	CLIP-seq
MIRT2146522	hsa-miR-766	CLIP-seq
MIRT2660559	hsa-miR-767-5p	CLIP-seq
MIRT2146523	hsa-miR-769-5p	CLIP-seq
MIRT2660560	hsa-miR-873	CLIP-seq
MIRT2660561	hsa-miR-935	CLIP-seq

Show/Hide all(33)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	23901104, 24554770, 28325809, 28514442, 31806350, 32296183, 32353859, 32838362, 33060197, 33422265, 33452816, 33845483, 33947832, 33961781, 34232536, 34706264, 35271311, 36217030, 37821429
GO:0005737	Component	Cytoplasm	IBA
GO:0005737	Component	Cytoplasm	IEA
GO:0005764	Component	Lysosome	IEA
GO:0005765	Component	Lysosomal membrane	HDA	17897319
GO:0005765	Component	Lysosomal membrane	IDA	23167963
GO:0005765	Component	Lysosomal membrane	IEA
GO:0005768	Component	Endosome	IEA
GO:0005770	Component	Late endosome	IDA	33422265
GO:0006886	Process	Intracellular protein transport	IEA
GO:0006914	Process	Autophagy	IBA
GO:0006914	Process	Autophagy	IEA
GO:0006914	Process	Autophagy	IMP	24554770
GO:0008333	Process	Endosome to lysosome transport	IMP	25266290, 25783203
GO:0010008	Component	Endosome membrane	TAS
GO:0012505	Component	Endomembrane system	IEA
GO:0015031	Process	Protein transport	IEA
GO:0016020	Component	Membrane	IBA
GO:0016020	Component	Membrane	IEA
GO:0016192	Process	Vesicle-mediated transport	IEA
GO:0030123	Component	AP-3 adaptor complex	IEA
GO:0030897	Component	HOPS complex	IDA	19109425, 23901104, 24554770, 37821429
GO:0030897	Component	HOPS complex	NAS	24554770
GO:0031902	Component	Late endosome membrane	IDA	23167963
GO:0031902	Component	Late endosome membrane	IEA
GO:0032456	Process	Endocytic recycling	IMP	25266290
GO:0034058	Process	Endosomal vesicle fusion	IBA
GO:0034058	Process	Endosomal vesicle fusion	IDA	23167963
GO:0034058	Process	Endosomal vesicle fusion	NAS	24554770
GO:0035542	Process	Regulation of SNARE complex assembly	NAS	24554770
GO:0061909	Process	Autophagosome-lysosome fusion	IDA	33422265
GO:1902501	Component	Lysosomal HOPS complex	IDA	33422265
GO:1902774	Process	Late endosome to lysosome transport	IDA	23167963

MIM	HGNC	e!Ensembl
612188	20593	ENSG00000166887

Protein

UniProt ID

Q96JC1

Protein name

Vam6/Vps39-like protein (TRAP1-like protein) (hVam6p)

Protein function

Regulator of TGF-beta/activin signaling, inhibiting SMAD3- and activating SMAD2-dependent transcription. Acts by interfering with SMAD3/SMAD4 complex formation, this would lead to inhibition of SMAD3-dependent transcription and relieve SMAD3 inh

PDB

6ZE9

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00780	CNH	20 → 291	CNH domain	Family
PF10366	Vps39_1	460 → 562	Vacuolar sorting protein 39 domain 1	Family
PF10367	Vps39_2	772 → 880	Vacuolar sorting protein 39 domain 2	Domain

Tissue specificity

TISSUE SPECIFICITY: Widely expressed, with highest levels in heart, skeletal muscle, kidney, pancreas, brain, placenta and spleen. {ECO:0000269|PubMed:11448994, ECO:0000269|PubMed:12941698}.

Sequence

MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLA
IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS
KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT

Sequence length

886

Interactions

View interactions

	KEGG
	Autophagy - animal Efferocytosis Salmonella infection

VPS39 (VPS39 subunit of HOPS complex)