Gene Gene information from NCBI Gene database.
Entrez ID 2332
Gene name Fragile X messenger ribonucleoprotein 1
Gene symbol FMR1
Synonyms (NCBI Gene)
FMRPFRAXAPOFPOF1
Chromosome X
Chromosome location Xq27.3
Summary The protein encoded by this gene binds RNA and is associated with polysomes. The encoded protein may be involved in mRNA trafficking from the nucleus to the cytoplasm. A trinucleotide repeat (CGG) in the 5` UTR is normally found at 6-53 copies, but an exp
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs121434622 T>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs886041088 A>C,G,T Pathogenic Intron variant
rs886041089 G>A Pathogenic Splice donor variant
rs1057518038 A>G Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs1057518850 A>G Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
285
miRTarBase ID miRNA Experiments Reference
MIRT007375 hsa-miR-101-3p Luciferase reporter assay 23390134
MIRT007376 hsa-miR-129-5p Luciferase reporter assay 23390134
MIRT007377 hsa-miR-221-3p Luciferase reporter assay 23390134
MIRT030988 hsa-miR-21-5p Microarray 18591254
MIRT109112 hsa-miR-130b-3p Luciferase reporter assayqRT-PCRWestern blot 24021279
Transcription factors Transcription factors information provided by TRRUST V2 database.
9
Transcription factor Regulation Reference
MYC Unknown 9328468
NRF1 Activation 11058604;16500891
NRF1 Unknown 15175277;9302255;9328468
SP1 Activation 16500891
SP1 Unknown 10612627;15175277;9328468
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
170
GO ID Ontology Definition Evidence Reference
GO:0000290 Process Deadenylation-dependent decapping of nuclear-transcribed mRNA IDA 31439799
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IDA 18653529
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IEA
GO:0000775 Component Chromosome, centromeric region IEA
GO:0002092 Process Positive regulation of receptor internalization IDA 25561520
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
309550 3775 ENSG00000102081
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q06787
Protein name Fragile X messenger ribonucleoprotein 1 (Fragile X messenger ribonucleoprotein) (FMRP) (Protein FMR-1)
Protein function Multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic
PDB 2BKD , 2FMR , 2LA5 , 2QND , 4OVA , 4QVZ , 4QW2 , 5DE5 , 5DE8 , 5DEA , 5UWJ , 5UWO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18336 Tudor_FRX1 4 52 Fragile X mental retardation Tudor domain Domain
PF05641 Agenet 62 117 Agenet domain Domain
PF17904 KH_9 123 207 FMRP KH0 domain Domain
PF00013 KH_1 220 280 KH domain Domain
PF00013 KH_1 283 333 KH domain Domain
PF12235 FXMRP1_C_core 420 547 Fragile X-related 1 protein core C terminal Family
PF16098 FXMR_C2 549 632 Fragile X-related mental retardation protein C-terminal region 2 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain, cerebellum and testis (PubMed:8401578, PubMed:9259278). Also expressed in epithelial tissues (PubMed:8401578). Expressed in mature oligodendrocytes (OLGs) (PubMed:23891804). Expressed in fibroblast (PubMed:24204
Sequence
Sequence length 632
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
85
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autistic behavior Likely pathogenic rs1057518850 RCV000415417
Fragile X syndrome Likely pathogenic; Pathogenic rs2043856428, rs2521451788, rs193922936, rs121434622, rs1569545562, rs1557176576, rs2521479850, rs1569545382 RCV001328911
RCV002287600
RCV000162201
RCV000010648
RCV000010649
RCV000010650
RCV004595328
RCV000022880
Fragile X-associated tremor/ataxia syndrome Likely pathogenic rs2521504046 RCV003228810
Intellectual disability Likely pathogenic; Pathogenic rs782367211, rs2521361687, rs886041088, rs886041089, rs1057518850 RCV002463572
RCV003228811
RCV000258895
RCV000258904
RCV000415417
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cholangiocarcinoma Benign rs25714 RCV005886374
FMR1-related disorder Likely benign; Uncertain significance; Benign rs200138498, rs781827082, rs143889976, rs782472011, rs782377065, rs2043832736, rs782218323, rs2187601, rs111485627, rs183130936 RCV004746455
RCV003937623
RCV003927777
RCV003897626
RCV003399526
RCV003400035
RCV003974707
RCV003901448
RCV003980335
RCV003973001
Gastric cancer Uncertain significance; Benign; Likely benign rs781827082, rs139029212 RCV005892018
RCV005900989
Hepatocellular carcinoma Benign rs25714 RCV005886370
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 17161622, 34413513
Abortion Habitual Associate 24423935, 31096929, 31625034
Abortion Spontaneous Associate 29054962, 31625034
Adenocarcinoma Associate 36133437
Agnosia Associate 24521091
Agoraphobia Associate 31899609
Alcohol Related Disorders Associate 26802682, 30385191, 31899609
Alzheimer Disease Associate 25111034, 32161452, 37769462
Amenorrhea Associate 21944929
Amyotrophic Lateral Sclerosis Associate 28424484