Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2332
Gene name Gene Name - the full gene name approved by the HGNC.
Fragile X messenger ribonucleoprotein 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
FMR1
Synonyms (NCBI Gene) Gene synonyms aliases
FMRP, FRAXA, POF, POF1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
POF1
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq27.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene binds RNA and is associated with polysomes. The encoded protein may be involved in mRNA trafficking from the nucleus to the cytoplasm. A trinucleotide repeat (CGG) in the 5` UTR is normally found at 6-53 copies, but an exp
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121434622 T>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs886041088 A>C,G,T Pathogenic Intron variant
rs886041089 G>A Pathogenic Splice donor variant
rs1057518038 A>G Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs1057518850 A>G Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT007375 hsa-miR-101-3p Luciferase reporter assay 23390134
MIRT007376 hsa-miR-129-5p Luciferase reporter assay 23390134
MIRT007377 hsa-miR-221-3p Luciferase reporter assay 23390134
MIRT030988 hsa-miR-21-5p Microarray 18591254
MIRT109112 hsa-miR-130b-3p Luciferase reporter assay, qRT-PCR, Western blot 24021279
Transcription factors
Transcription factor Regulation Reference
MYC Unknown 9328468
NRF1 Activation 11058604;16500891
NRF1 Unknown 15175277;9302255;9328468
SP1 Activation 16500891
SP1 Unknown 10612627;15175277;9328468
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IBA 21873635
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IDA 18653529
GO:0000775 Component Chromosome, centromeric region IEA
GO:0001934 Process Positive regulation of protein phosphorylation IBA 21873635
GO:0002092 Process Positive regulation of receptor internalization IDA 25561520
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
309550 3775 ENSG00000102081
Protein
UniProt ID Q06787
Protein name Fragile X messenger ribonucleoprotein 1 (Fragile X messenger ribonucleoprotein) (FMRP) (Protein FMR-1)
Protein function Multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic
PDB 2BKD , 2FMR , 2LA5 , 2QND , 4OVA , 4QVZ , 4QW2 , 5DE5 , 5DE8 , 5DEA , 5UWJ , 5UWO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18336 Tudor_FRX1 4 52 Fragile X mental retardation Tudor domain Domain
PF05641 Agenet 62 117 Agenet domain Domain
PF17904 KH_9 123 207 FMRP KH0 domain Domain
PF00013 KH_1 220 280 KH domain Domain
PF00013 KH_1 283 333 KH domain Domain
PF12235 FXMRP1_C_core 420 547 Fragile X-related 1 protein core C terminal Family
PF16098 FXMR_C2 549 632 Fragile X-related mental retardation protein C-terminal region 2 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain, cerebellum and testis (PubMed:8401578, PubMed:9259278). Also expressed in epithelial tissues (PubMed:8401578). Expressed in mature oligodendrocytes (OLGs) (PubMed:23891804). Expressed in fibroblast (PubMed:24204
Sequence
Sequence length 632
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019
Autism Autistic Disorder, Autistic behavior rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
14755444, 18621663, 15000256, 9806479, 20425835
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Mental depression Depressive disorder, Unipolar Depression, Major Depressive Disorder 18553360, 23778581 ClinVar
Otitis media Chronic otitis media ClinVar
Fragile X Syndrome fragile X-associated tremor/ataxia syndrome, symptomatic form of fragile X syndrome in female carrier GenCC
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 17161622, 34413513
Abortion Habitual Associate 24423935, 31096929, 31625034
Abortion Spontaneous Associate 29054962, 31625034
Adenocarcinoma Associate 36133437
Agnosia Associate 24521091
Agoraphobia Associate 31899609
Alcohol Related Disorders Associate 26802682, 30385191, 31899609
Alzheimer Disease Associate 25111034, 32161452, 37769462
Amenorrhea Associate 21944929
Amyotrophic Lateral Sclerosis Associate 28424484