Gene Gene information from NCBI Gene database.
Entrez ID 23261
Gene name Calmodulin binding transcription activator 1
Gene symbol CAMTA1
Synonyms (NCBI Gene)
CANPMRCECBA
Chromosome 1
Chromosome location 1p36.31-p36.23
Summary The protein encoded by this gene contains a CG1 DNA-binding domain, a transcription factor immunoglobulin domain, ankyrin repeats, and calmodulin-binding IQ motifs. The encoded protein is thought to be a transcription factor and may be a tumor suppressor.
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs863224853 A>G Likely-pathogenic Coding sequence variant, genic downstream transcript variant, missense variant
rs886041635 C>T Pathogenic Genic downstream transcript variant, coding sequence variant, stop gained
rs886041999 A>- Pathogenic Frameshift variant, genic downstream transcript variant, coding sequence variant, genic upstream transcript variant
rs886043243 C>T Likely-pathogenic Genic downstream transcript variant, coding sequence variant, stop gained
rs1057523792 C>T Likely-pathogenic Genic downstream transcript variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
203
miRTarBase ID miRNA Experiments Reference
MIRT001953 hsa-miR-129-5p Luciferase reporter assay 18189265
MIRT005101 hsa-miR-155-5p Microarray 19193853
MIRT005101 hsa-miR-155-5p Proteomics 18668040
MIRT024244 hsa-miR-218-5p Sequencing 20371350
MIRT025573 hsa-miR-34a-5p Sequencing 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
11
GO ID Ontology Definition Evidence Reference
GO:0003677 Function DNA binding IEA
GO:0003690 Function Double-stranded DNA binding IBA
GO:0003712 Function Transcription coregulator activity IBA
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611501 18806 ENSG00000171735
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y6Y1
Protein name Calmodulin-binding transcription activator 1
Protein function Transcriptional activator.
PDB 2CXK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03859 CG-1 69 182 CG-1 domain Domain
PF01833 TIG 872 952 IPT/TIG domain Domain
PF00612 IQ 1594 1609 IQ calmodulin-binding motif Motif
Tissue specificity TISSUE SPECIFICITY: Normally expressed in non-neoplastic adult central nervous system tissues: detected in whole brain, cerebellum, brain cortex, occipital lobe, frontal lobe, temporal lobe, putamen. Expression levels are low in oligodendroglial tumors, a
Sequence
MWRAEGKWLPKTSRKSVSQSVFCGTSTYCVLNTVPPIEDDHGNSNSSHVKIFLPKKLLEC
LPKCSSLPKERHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNRKKVKYRKD
GYCWKKRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTFHRRCYWLLQNPDIVLVHYL
NV
PAIEDCGKPCGPILCSINTDKKEWAKWTKEELIGQLKPMFHGIKWTCSNGNSSSGFSV
EQLVQQILDSHQTKPQPRTHNCLCTGSLGAGGSVHHKCNSAKHRIISPKVEPRTGGYGSH
SEVQHNDVSEGKHEHSHSKGSSREKRNGKVAKPVLLHQSSTEVSSTNQVEVPDTTQSSPV
SISSGLNSDPDMVDSPVVTGVSGMAVASVMGSLSQSATVFMSEVTNEAVYTMSPTAGPNH
HLLSPDASQGLVLAVSSDGHKFAFPTTGSSESLSMLPTNVSEELVLSTTLDGGRKIPETT
MNFDPDCFLNNPKQGQTYGGGGLKAEMVSSNIRHSPPGERSFSFTTVLTKEIKTEDTSFE
QQMAKEAYSSSAAAVAASSLTLTAGSSLLPSGGGLSPSTTLEQMDFSAIDSNKDYTSSFS
QTGHSPHIHQTPSPSFFLQDASKPLPVEQNTHSSLSDSGGTFVMPTVKTEASSQTSSCSG
HVETRIESTSSLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLLKSGELQACSSEHYLQ
PETNGVIRSAGGVPILPGNVVQGLYPVAQPSLGNASNMELSLDHFDISFSNQFSDLINDF
ISVEGGSSTIYGHQLVSGDSTALSQSEDGARAPFTQAEMCLPCCSPQQGSLQLSSSEGGA
STMAYMHVAEVVSAASAQGTLGMLQQSGRVFMVTDYSPEWSYPEGGVKVLITGPWQEASN
NYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQIISNSVVFEY
KARALPTL
PSSQHDWLSLDDNQFRMSILERLEQMERRMAEMTGSQQHKQASGGGSSGGGSGSGNGGSQ
AQCASGTGALGSCFESRVVVVCEKMMSRACWAKSKHLIHSKTFRGMTLLHLAAAQGYATL
IQTLIKWRTKHADSIDLELEVDPLNVDHFSCTPLMWACALGHLEAAVVLYKWDRRAISIP
DSLGRLPLGIARSRGHVKLAECLEHLQRDEQAQLGQNPRIHCPASEEPSTESWMAQWHSE
AISSPEIPKGVTVIASTNPELRRPRSEPSNYYSSESHKDYPAPKKHKLNPEYFQTRQEKL
LPTALSLEEPNIRKQSPSSKQSVPETLSPSEGVRDFSRELSPPTPETAAFQASGSQPVGK
WNSKDLYIGVSTVQVTGNPKGTSVGKEAAPSQVRPREPMSVLMMANREVVNTELGSYRDS
AENEECGQPMDDIQVNMMTLAEHIIEATPDRIKQENFVPMESSGLERTDPATISSTMSWL
ASYLADADCLPSAAQIRSAYNEPLTPSSNTSLSPVGSPVSEIAFEKPNLPSAADWSEFLS
ASTSEKVENEFAQLTLSDHEQRELYEAARLVQTAFRKYKGRPLREQQEVAAAVIQRCYRK
YKQYALYKKMTQAAILIQSKFRSYYEQKKFQQSRRAAVLIQKYYRSYKKCGKRRQARRTA
VIVQQKLRSSLLTKKQDQAARKIMRFLRRCRHSPLVDHRLYKRSERIEKGQGT
Sequence length 1673
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
204
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
CAMTA1-related disorder Pathogenic rs2523920375, rs1577313897 RCV004550647
RCV003233923
Cerebellar dysfunction with variable cognitive and behavioral abnormalities Likely pathogenic; Pathogenic rs2096866859, rs2150160765, rs2149221667, rs2150160606, rs2148504421, rs2149303084, rs776553769, rs2149989087, rs754008719, rs2523729567, rs2523750276, rs863224853, rs2523751784, rs2149303175, rs1558085770
View all (21 more)
RCV001330627
RCV001724752
RCV001780712
RCV001814932
RCV001839060
RCV001839061
RCV002226861
RCV002249326
RCV002274450
RCV002308492
RCV002468818
RCV000200068
RCV003123265
RCV003139542
RCV003147908
RCV002287403
RCV001838996
RCV003314138
RCV003333470
RCV004555212
RCV004594903
RCV004595147
RCV001839006
RCV001839007
RCV000496160
RCV002496909
RCV005400456
RCV000677645
RCV000986228
RCV005606746
RCV001249352
RCV001249682
RCV001254123
RCV001261980
RCV001264739
RCV001270423
Intellectual disability Pathogenic rs2095751954 RCV001260652
Malignant tumor of urinary bladder Likely pathogenic rs1417768010 RCV005931100
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Developmental disorder Likely benign rs2150108300, rs2526327950 RCV001843758
RCV003128074
Epilepsy Conflicting classifications of pathogenicity rs143630062 RCV005626811
Familial cancer of breast Likely benign rs149319992 RCV005903154
Lung cancer Benign; Likely benign rs111266786 RCV005904404
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Amyotrophic Lateral Sclerosis Associate 27244217
Amyotrophic lateral sclerosis 1 Associate 27244217
Ataxia Associate 32157189
Breast Neoplasms Associate 28550685
Carcinogenesis Associate 21584898
Cardiovascular Diseases Associate 21951953
Cataract Age Related Nuclear Associate 21686326
Cataract posterior polar 1 Associate 21686326
Chemical and Drug Induced Liver Injury Associate 31662570
Congenital Abnormalities Associate 32157189