Gene Gene information from NCBI Gene database.
Entrez ID 23209
Gene name Modulator of VRAC current 1
Gene symbol MLC1
Synonyms (NCBI Gene)
LVMMLCVL
Chromosome 22
Chromosome location 22q13.33
Summary The function of this gene product is unknown; however, homology to other proteins suggests that it may be an integral membrane transporter. Mutations in this gene have been associated with megalencephalic leukoencephalopathy with subcortical cysts, an aut
SNPs SNP information provided by dbSNP.
40
SNP ID Visualize variation Clinical significance Consequence
rs80358241 ->G Pathogenic Frameshift variant, coding sequence variant, intron variant, non coding transcript variant
rs80358242 C>T Likely-pathogenic, pathogenic Coding sequence variant, intron variant, non coding transcript variant, missense variant
rs80358243 A>G,T Likely-pathogenic Intron variant
rs80358245 G>A Likely-pathogenic Coding sequence variant, intron variant, non coding transcript variant, missense variant
rs121908343 G>A,T Pathogenic Intron variant, synonymous variant, non coding transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
101
miRTarBase ID miRNA Experiments Reference
MIRT017034 hsa-miR-335-5p Microarray 18185580
MIRT1150585 hsa-miR-1184 CLIP-seq
MIRT1150586 hsa-miR-150 CLIP-seq
MIRT1150587 hsa-miR-3157-3p CLIP-seq
MIRT1150588 hsa-miR-342-3p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
46
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 17628813, 19931615, 22328087, 32814053
GO:0005737 Component Cytoplasm IDA 15892299
GO:0005737 Component Cytoplasm IEA
GO:0005764 Component Lysosome IEA
GO:0005764 Component Lysosome ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605908 17082 ENSG00000100427
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15049
Protein name Membrane protein MLC1 (Megalencephalic leukoencephalopathy with subcortical cysts protein 1)
Protein function Transmembrane protein mainly expressed in brain astrocytes that may play a role in transport across the blood-brain and brain-cerebrospinal fluid barriers (PubMed:22328087). Regulates the response of astrocytes to hypo-osmosis by promoting calci
Family and domains
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain, with highest levels found in the amygdala, nucleus caudatus, thalamus and hippocampus. {ECO:0000269|PubMed:11326298}.
Sequence
MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
EFDKEKAWRAVVVQMAQ
Sequence length 377
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
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Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cerebellar ataxia Likely pathogenic; Pathogenic rs80358243 RCV000626926
CNS demyelination Likely pathogenic; Pathogenic rs80358243 RCV000626926
Macrocephaly Likely pathogenic; Pathogenic rs80358243 RCV000626926
Megalencephalic leukoencephalopathy with subcortical cysts Likely pathogenic; Pathogenic rs752428321, rs1289520784, rs1425784992, rs1050220787, rs80358245, rs121908345, rs267607236, rs80358242, rs80358241, rs766231298, rs1057516465, rs1057516766, rs281875309, rs281875317, rs1569242061
View all (4 more)
RCV001831368
RCV003317503
RCV001806844
RCV002307813
RCV003155016
RCV001844006
RCV001826417
RCV001826418
RCV001274276
RCV005419658
RCV004017600
RCV001833490
RCV001826507
RCV004768531
RCV005606707
RCV002298788
RCV001831812
RCV003235028
RCV004689442
RCV001274272
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormality of the nervous system Conflicting classifications of pathogenicity rs1374593138 RCV001814208
Acute myeloid leukemia Benign rs80312581, rs41283489, rs141840641 RCV005897564
RCV005897565
RCV005913896
Familial cancer of breast Uncertain significance rs766524233 RCV005924077
Gastric cancer Benign; Likely benign rs745656804 RCV005871010
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
AA amyloidosis Associate 21315556
Adenocarcinoma Associate 32509861
Alzheimer Disease Associate 24439168
Amyloidosis Associate 12515719, 21315556, 31364359
Arthritis Juvenile Associate 12562401, 2022732
Arthritis Rheumatoid Associate 12562401, 8218839
Astrocytoma Associate 32521795, 36078064
Brain Edema Associate 36078064
Brain Neoplasms Associate 37722850
Breast Neoplasms Associate 11259089, 27773611