Gene Gene information from NCBI Gene database.
Entrez ID 23022
Gene name Palladin, cytoskeletal associated protein
Gene symbol PALLD
Synonyms (NCBI Gene)
CGI-151CGI151MYNPNCA1SIH002
Chromosome 4
Chromosome location 4q32.3
Summary This gene encodes a cytoskeletal protein that is required for organizing the actin cytoskeleton. The protein is a component of actin-containing microfilaments, and it is involved in the control of cell shape, adhesion, and contraction. Polymorphisms in th
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs121908291 C>T Risk-factor, uncertain-significance, benign Missense variant, coding sequence variant, genic downstream transcript variant, intron variant
rs139375029 T>C,G Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant, genic downstream transcript variant, 5 prime UTR variant
rs140454899 A>T Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, genic upstream transcript variant, coding sequence variant
rs587780760 T>G Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, coding sequence variant, intron variant
rs753092219 C>T Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, synonymous variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
272
miRTarBase ID miRNA Experiments Reference
MIRT020550 hsa-miR-155-5p Proteomics 18668040
MIRT022312 hsa-miR-124-3p Microarray 18668037
MIRT030662 hsa-miR-21-5p Microarray 18591254
MIRT031101 hsa-miR-19b-3p Sequencing 20371350
MIRT048248 hsa-miR-196a-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
41
GO ID Ontology Definition Evidence Reference
GO:0001725 Component Stress fiber IDA 11598191
GO:0001725 Component Stress fiber IEA
GO:0001726 Component Ruffle IEA
GO:0002102 Component Podosome IEA
GO:0003334 Process Keratinocyte development IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608092 17068 ENSG00000129116
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8WX93
Protein name Palladin (SIH002) (Sarcoma antigen NY-SAR-77)
Protein function Cytoskeletal protein required for organization of normal actin cytoskeleton. Roles in establishing cell morphology, motility, cell adhesion and cell-extracellular matrix interactions in a variety of cell types. May function as a scaffolding mole
PDB 2DM2 , 2DM3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 271 361 Immunoglobulin I-set domain Domain
PF07679 I-set 441 538 Immunoglobulin I-set domain Domain
PF07679 I-set 1001 1092 Immunoglobulin I-set domain Domain
PF07679 I-set 1135 1225 Immunoglobulin I-set domain Domain
PF07679 I-set 1234 1325 Immunoglobulin I-set domain Domain
Tissue specificity TISSUE SPECIFICITY: Detected in both muscle and non-muscle tissues. High expression in prostate, ovary, colon, and kidney. Not detected in spleen, skeletal muscle, lung and peripheral blood lymphocytes (at protein level). Protein is overexpressed in FA6,
Sequence
MSGTSSHESFYDSLSDMQEESKNTDFFPGLSAFLSQEEINKSLDLARRAIADSETEDFDS
EKEISQIFSTSPASLCEHPSHKETKLGEHASRRPQDNRSTPVQPLAEKQTKSISSPVSKR
KPAMSPLLTRPSYIRSLRKAEKRGAKTPSTNVKPKTPHQRKGGPQSQLCDKAANLIEELT
SIFKAAKPRNRSPNGESSSPDSGYLSPKNQPSALLSASASQSPMEDQGEMEREVKSPGAR
HCYQDNQDLAVPHNRKSHPQPHSALHFPAAPRFIQKLRSQEVAEGSRVYLECRVTGNPTP
RVRWFCEGKELHNTPDIQIHCEGGDLHTLIIAEAFEDDTGRYTCLATNPSGSDTTSAEVF
I
EGASSTDSDSESLAFKSRAGAMPQAQKKTTSVSLTIGSSSPKTGVTTAVIQPLSVPVQQ
VHSPTSYLCRPDGTTTAYFPPVFTKELQNTAVAEGQVVVLECRVRGAPPLQVQWFRQGSE
IQDSPDFRILQKKPRSTAEPEEICTLVIAETFPEDAGIFTCSARNDYGSATSTAQLVV
TS
ANTENCSYESMGESNNDHFQHFPPPPPILETSSLELASKKPSEIQQVNNPELGLSRAALQ
MQFNAAERETNGVHPSRGVNGLINGKANSNKSLPTPAVLLSPTKEPPPLLAKPKLDPLKL
QQLQNQIRLEQEAGARQPPPAPRSAPPSPPFPPPPAFPELAACTPPASPEPMSALASRSA
PAMQSSGSFNYARPKQFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPRQFGRAPVPPF
AQPFGAEPEAPWGSSSPSPPPPPPPVFSPTAAFPVPDVFPLPPPPPPLPSPGQASHCSSP
ATRFGHSQTPAAFLSALLPSQPPPAAVNALGLPKGVTPAGFPKKASRTARIASDEEIQGT
KDAVIQDLERKLRFKEDLLNNGQPRLTYEERMARRLLGADSATVFNIQEPEEETANQEYK
VSSCEQRLISEIEYRLERSPVDESGDEVQYGDVPVENGMAPFFEMKLKHYKIFEGMPVTF
TCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP
QGRISCTGRLMV
QAVNQRGRSPRSPSGHPHVRRPRSRSRDSGDENEPIQERFFRPHFLQA
PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS
RDAGIYTCIATNRAGQNSFSLELVV
AAKEAHKPPVFIEKLQNTGVADGYPVRLECRVLGV
PPPQIFWKKENESLTHSTDRVSMHQDNHGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT
ARLDV
YTQWHQQSQSTKPKKVRPSASRYAALSDQGLDIKAAFQPEANPSHLTLNTALVES
EDL
Sequence length 1383
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
950
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Likely benign rs7691375, rs10010909, rs112116419 RCV005918551
RCV005920409
RCV005897785
Carcinoma of pancreas Uncertain significance; Conflicting classifications of pathogenicity; Benign; Likely benign rs886059208, rs548068667, rs1363457314, rs398064261, rs71719276, rs796761323, rs1553986519, rs886059211, rs28364802 RCV000269757
RCV000315803
RCV000315023
RCV000389268
RCV000335736
RCV000324866
RCV000303576
RCV000385204
RCV000350998
RCV000289470
RCV000278358
Cervical cancer Uncertain significance; Benign; Likely benign rs761530979, rs1760003825, rs112116419 RCV005893597
RCV005927123
RCV005897786
Cholangiocarcinoma Benign rs1059444 RCV005897784
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Breast Neoplasms Associate 20471940
Breast Neoplasms Inhibit 21050850
Carcinogenesis Associate 21738681
Carcinoma Hepatocellular Associate 37960718
Carcinoma Pancreatic Ductal Associate 17404500, 27023252, 33764904
Carcinoma Renal Cell Associate 21738681
Cardiomyopathies Associate 32631246
Cardiomyopathy Restrictive Associate 36174041
Colorectal Neoplasms Associate 32859214
Coronary Disease Associate 18073581