Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	22996
Gene name Gene Name - the full gene name approved by the HGNC.	Tetratricopeptide repeat domain 39A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	TTC39A
Synonyms (NCBI Gene) Gene synonyms aliases	C1orf34, DEME-6
Chromosome Chromosome number	1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	1p32.3

Show/Hide all(127)

miRTarBase ID	miRNA	Experiments	Reference
MIRT042435	hsa-miR-424-5p	CLASH	23622248
MIRT665612	hsa-miR-508-5p	HITS-CLIP	23824327
MIRT665611	hsa-miR-1273g-3p	HITS-CLIP	23824327
MIRT665609	hsa-miR-6849-3p	HITS-CLIP	23824327
MIRT665610	hsa-miR-1292-3p	HITS-CLIP	23824327
MIRT665608	hsa-miR-766-3p	HITS-CLIP	23824327
MIRT665606	hsa-miR-4793-3p	HITS-CLIP	23824327
MIRT665607	hsa-miR-4299	HITS-CLIP	23824327
MIRT665605	hsa-miR-4252	HITS-CLIP	23824327
MIRT665604	hsa-miR-6512-3p	HITS-CLIP	23824327
MIRT665603	hsa-miR-6720-5p	HITS-CLIP	23824327
MIRT665602	hsa-miR-7703	HITS-CLIP	23824327
MIRT665612	hsa-miR-508-5p	HITS-CLIP	23824327
MIRT665611	hsa-miR-1273g-3p	HITS-CLIP	23824327
MIRT665609	hsa-miR-6849-3p	HITS-CLIP	23824327
MIRT665610	hsa-miR-1292-3p	HITS-CLIP	23824327
MIRT665608	hsa-miR-766-3p	HITS-CLIP	23824327
MIRT665606	hsa-miR-4793-3p	HITS-CLIP	23824327
MIRT665607	hsa-miR-4299	HITS-CLIP	23824327
MIRT665605	hsa-miR-4252	HITS-CLIP	23824327
MIRT665604	hsa-miR-6512-3p	HITS-CLIP	23824327
MIRT665603	hsa-miR-6720-5p	HITS-CLIP	23824327
MIRT665602	hsa-miR-7703	HITS-CLIP	23824327
MIRT1461552	hsa-miR-1273g	CLIP-seq
MIRT1461553	hsa-miR-5095	CLIP-seq
MIRT1461554	hsa-miR-548u	CLIP-seq
MIRT1461555	hsa-miR-552	CLIP-seq
MIRT1461556	hsa-miR-563	CLIP-seq
MIRT1461557	hsa-miR-600	CLIP-seq
MIRT1461558	hsa-miR-876-3p	CLIP-seq
MIRT1461559	hsa-miR-100	CLIP-seq
MIRT1461560	hsa-miR-1206	CLIP-seq
MIRT1461561	hsa-miR-128	CLIP-seq
MIRT1461562	hsa-miR-181a	CLIP-seq
MIRT1461563	hsa-miR-181b	CLIP-seq
MIRT1461564	hsa-miR-181c	CLIP-seq
MIRT1461565	hsa-miR-181d	CLIP-seq
MIRT1461566	hsa-miR-27a	CLIP-seq
MIRT1461567	hsa-miR-27b	CLIP-seq
MIRT1461568	hsa-miR-3689a-5p	CLIP-seq
MIRT1461569	hsa-miR-3689b	CLIP-seq
MIRT1461570	hsa-miR-3689e	CLIP-seq
MIRT1461571	hsa-miR-3689f	CLIP-seq
MIRT1461572	hsa-miR-4262	CLIP-seq
MIRT1461573	hsa-miR-4753-3p	CLIP-seq
MIRT1461574	hsa-miR-485-3p	CLIP-seq
MIRT1461575	hsa-miR-499-3p	CLIP-seq
MIRT1461576	hsa-miR-499a-3p	CLIP-seq
MIRT1461577	hsa-miR-548g	CLIP-seq
MIRT1461578	hsa-miR-99a	CLIP-seq
MIRT1461579	hsa-miR-99b	CLIP-seq
MIRT2138688	hsa-miR-1202	CLIP-seq
MIRT2138689	hsa-miR-1227	CLIP-seq
MIRT2138690	hsa-miR-1236	CLIP-seq
MIRT2138691	hsa-miR-1252	CLIP-seq
MIRT2138692	hsa-miR-1271	CLIP-seq
MIRT2138693	hsa-miR-140-5p	CLIP-seq
MIRT2138694	hsa-miR-182	CLIP-seq
MIRT2138695	hsa-miR-203	CLIP-seq
MIRT2138696	hsa-miR-3120-3p	CLIP-seq
MIRT2138697	hsa-miR-3130-3p	CLIP-seq
MIRT2138698	hsa-miR-3157-3p	CLIP-seq
MIRT2138699	hsa-miR-3177-3p	CLIP-seq
MIRT2138700	hsa-miR-3194-5p	CLIP-seq
MIRT2138701	hsa-miR-3909	CLIP-seq
MIRT2138702	hsa-miR-3938	CLIP-seq
MIRT2138703	hsa-miR-3972	CLIP-seq
MIRT2138704	hsa-miR-4267	CLIP-seq
MIRT2138705	hsa-miR-4307	CLIP-seq
MIRT2138706	hsa-miR-4328	CLIP-seq
MIRT2138707	hsa-miR-4436b-3p	CLIP-seq
MIRT2138708	hsa-miR-4494	CLIP-seq
MIRT2138709	hsa-miR-4638-5p	CLIP-seq
MIRT2138710	hsa-miR-4642	CLIP-seq
MIRT2138711	hsa-miR-4672	CLIP-seq
MIRT2138712	hsa-miR-4680-3p	CLIP-seq
MIRT2138713	hsa-miR-4704-5p	CLIP-seq
MIRT2138714	hsa-miR-4781-3p	CLIP-seq
MIRT2138715	hsa-miR-544	CLIP-seq
MIRT2138716	hsa-miR-545	CLIP-seq
MIRT1461554	hsa-miR-548u	CLIP-seq
MIRT2138717	hsa-miR-874	CLIP-seq
MIRT2138718	hsa-miR-938	CLIP-seq
MIRT2138719	hsa-miR-944	CLIP-seq
MIRT2138720	hsa-miR-96	CLIP-seq
MIRT2138707	hsa-miR-4436b-3p	CLIP-seq
MIRT2359549	hsa-miR-1207-5p	CLIP-seq
MIRT2359550	hsa-miR-1909	CLIP-seq
MIRT2359551	hsa-miR-3714	CLIP-seq
MIRT2138707	hsa-miR-4436b-3p	CLIP-seq
MIRT2359552	hsa-miR-4716-3p	CLIP-seq
MIRT2359553	hsa-miR-4723-5p	CLIP-seq
MIRT2359554	hsa-miR-4728-5p	CLIP-seq
MIRT2359555	hsa-miR-4761-3p	CLIP-seq
MIRT2359556	hsa-miR-4763-3p	CLIP-seq
MIRT2359557	hsa-miR-4800-5p	CLIP-seq
MIRT2359558	hsa-miR-548an	CLIP-seq
MIRT2359559	hsa-miR-711	CLIP-seq
MIRT2359560	hsa-miR-940	CLIP-seq
MIRT2652853	hsa-miR-146a	CLIP-seq
MIRT2652854	hsa-miR-146b-5p	CLIP-seq
MIRT2652855	hsa-miR-198	CLIP-seq
MIRT2652856	hsa-miR-28-5p	CLIP-seq
MIRT2652857	hsa-miR-3139	CLIP-seq
MIRT2652858	hsa-miR-4251	CLIP-seq
MIRT2138704	hsa-miR-4267	CLIP-seq
MIRT2652859	hsa-miR-4433	CLIP-seq
MIRT2652860	hsa-miR-4459	CLIP-seq
MIRT2138712	hsa-miR-4680-3p	CLIP-seq
MIRT2652861	hsa-miR-4768-3p	CLIP-seq
MIRT2652862	hsa-miR-589	CLIP-seq
MIRT2652863	hsa-miR-628-5p	CLIP-seq
MIRT2652864	hsa-miR-708	CLIP-seq
MIRT2652853	hsa-miR-146a	CLIP-seq
MIRT2652854	hsa-miR-146b-5p	CLIP-seq
MIRT2652855	hsa-miR-198	CLIP-seq
MIRT2652856	hsa-miR-28-5p	CLIP-seq
MIRT2652857	hsa-miR-3139	CLIP-seq
MIRT2652858	hsa-miR-4251	CLIP-seq
MIRT2138704	hsa-miR-4267	CLIP-seq
MIRT2652859	hsa-miR-4433	CLIP-seq
MIRT2652860	hsa-miR-4459	CLIP-seq
MIRT2138712	hsa-miR-4680-3p	CLIP-seq
MIRT2652861	hsa-miR-4768-3p	CLIP-seq
MIRT2652862	hsa-miR-589	CLIP-seq
MIRT2652863	hsa-miR-628-5p	CLIP-seq
MIRT2652864	hsa-miR-708	CLIP-seq

Show/Hide all(2)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	32296183
GO:0005813	Component	Centrosome	IDA

MIM	HGNC	e!Ensembl
619885	18657	ENSG00000085831

Protein

UniProt ID

Q5SRH9

Protein name

Tetratricopeptide repeat protein 39A (TPR repeat protein 39A) (Differentially expressed in MCF-7 with estradiol protein 6) (DEME-6)

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF10300	DUF3808	29 → 148	Protein of unknown function (DUF3808)	Family
PF10300	DUF3808	171 → 518	Protein of unknown function (DUF3808)	Family

Sequence

MGQKGHKDSLYPCGGTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLT
YATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEE
EIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQDEN
MVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTR
ILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEA
EKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELM
WCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDEVELFRAV
PGLKLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGI
LEIITKAEEMLEKGPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSISANEKKIKY
DHYLIPNALLELALLLMEQDRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAKSSL
ENSSRSMVSSVSL

Sequence length

613

Interactions

View interactions

Show/Hide Unknown Diseases (2)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Heart Failure	Heart failure	N/A	N/A	GWAS
Wolff-Parkinson-White Syndrome	Wolff-Parkinson-White pattern	N/A	N/A	ClinVar

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Breast Neoplasms	Associate	9461476

TTC39A (tetratricopeptide repeat domain 39A)