Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
22930
Gene name Gene Name - the full gene name approved by the HGNC.
RAB3 GTPase activating protein catalytic subunit 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
RAB3GAP1
Synonyms (NCBI Gene) Gene synonyms aliases
MARTS2, P130, RAB3GAP, RAB3GAP130, WARBM1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
MARTS2, WARBM1
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q21.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes the catalytic subunit of a Rab GTPase activating protein. The encoded protein forms a heterodimer with a non-catalytic subunit to specifically regulate the activity of members of the Rab3 subfamily of small G proteins. This protein media
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs137853052 C>G,T Pathogenic Non coding transcript variant, stop gained, coding sequence variant, missense variant
rs145829300 G>A Likely-pathogenic Coding sequence variant, stop gained, non coding transcript variant
rs267606996 C>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs532964185 C>T Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs577915245 T>C Conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT030289 hsa-miR-26b-5p Microarray 19088304
MIRT611918 hsa-miR-8485 HITS-CLIP 23824327
MIRT611917 hsa-miR-4789-3p HITS-CLIP 23824327
MIRT611916 hsa-miR-5011-5p HITS-CLIP 23824327
MIRT611915 hsa-miR-656-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005085 Function Guanyl-nucleotide exchange factor activity IMP 24891604
GO:0005085 Function Guanyl-nucleotide exchange factor activity TAS
GO:0005096 Function GTPase activator activity IBA 21873635
GO:0005096 Function GTPase activator activity IDA 9030515, 10859313, 16923123
GO:0005096 Function GTPase activator activity IMP 24891604
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602536 17063 ENSG00000115839
Protein
UniProt ID Q15042
Protein name Rab3 GTPase-activating protein catalytic subunit (RAB3 GTPase-activating protein 130 kDa subunit) (Rab3-GAP p130) (Rab3-GAP)
Protein function Catalytic subunit of the Rab3 GTPase-activating (Rab3GAP) complex composed of RAB3GAP1 and RAB3GAP2, which has GTPase-activating protein (GAP) activity towards various Rab3 subfamily members (RAB3A, RAB3B, RAB3C and RAB3D), RAB5A and RAB43, and
PDB 8VYB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13890 Rab3-GTPase_cat 612 769 Rab3 GTPase-activating protein catalytic subunit Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:9030515}.
Sequence
MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLA
IQKPADLARHL
LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
AQRAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSKALPQRMY
SVLTKEDFRLAGAFSSDTSFF
Sequence length 981
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    COPI-independent Golgi-to-ER retrograde traffic
RAB GEFs exchange GTP for GDP on RABs
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Agenesis of corpus callosum Agenesis of corpus callosum rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057, rs1384496494, rs1599017933
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Warburg Micro Syndrome Warburg micro syndrome 1, Warburg micro syndrome GenCC
Associations from Text Mining
Disease Name Relationship Type References
Alzheimer Disease Associate 34130600
Ataxia Associate 34130600
Bone Diseases Metabolic Associate 25332050
Brain Diseases Associate 34130600
Breast Neoplasms Associate 27512948
Carcinoma Papillary Associate 36553631
Cardiomyopathies Associate 27764520
Cataract Associate 16532399, 36553631
Chediak Higashi Syndrome Associate 34130600
Colorectal Neoplasms Associate 32303675