Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
22926
Gene name Gene Name - the full gene name approved by the HGNC.
Activating transcription factor 6
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ATF6
Synonyms (NCBI Gene) Gene synonyms aliases
ACHM7, ATF6A, ATP6alpha
Disease Acronyms (UniProt) Disease acronyms from UniProt database
ACHM7
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q23.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a transcription factor that activates target genes for the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress. Although it is a transcription factor, this protein is unusual in that it is synthesized as a transmembr
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs367613392 A>G,T Pathogenic Missense variant, coding sequence variant, stop gained
rs749537392 G>A,C Likely-pathogenic Coding sequence variant, missense variant
rs761129859 G>A,C Pathogenic Intron variant
rs761357250 C>T Pathogenic Coding sequence variant, missense variant
rs765383904 ->T Likely-pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000658 hsa-miR-424-5p Luciferase reporter assay 19956200
MIRT000650 hsa-miR-503-5p Luciferase reporter assay 19956200
MIRT019158 hsa-miR-335-5p Microarray 18185580
MIRT045796 hsa-miR-191-5p CLASH 23622248
MIRT053103 hsa-miR-199a-5p Luciferase reporter assay, qRT-PCR, Western blot 23598416
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding IDA 16469704
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 11779464
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605537 791 ENSG00000118217
Protein
UniProt ID P18850
Protein name Cyclic AMP-dependent transcription factor ATF-6 alpha (cAMP-dependent transcription factor ATF-6 alpha) (Activating transcription factor 6 alpha) (ATF6-alpha) [Cleaved into: Processed cyclic AMP-dependent transcription factor ATF-6 alpha]
Protein function [Cyclic AMP-dependent transcription factor ATF-6 alpha]: Precursor of the transcription factor form (Processed cyclic AMP-dependent transcription factor ATF-6 alpha), which is embedded in the endoplasmic reticulum membrane (PubMed:10564271, PubM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00170 bZIP_1 305 367 bZIP transcription factor Coiled-coil
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:9271374}.
Sequence
MGEPAGVAGTMESPFSPGLFHRLDEDWDSALFAELGYFTDTDELQLEAANETYENNFDNL
DFDLDLMPWESDIWDINNQICTVKDIKAEPQPLSPASSSYSVSSPRSVDSYSSTQHVPEE
LDLSSSSQMSPLSLYGENSNSLSSAEPLKEDKPVTGPRNKTENGLTPKKKIQVNSKPSIQ
PKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTKGQTVLLSQPTV
VQLQAPGVLPSAQPVLAVAGGVTQLPNHVVNVVPAPSANSPVNGKLSVTKPVLQSTMRNV
GSDIAVLRRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKENGTLKRQLD
EVVSENQ
RLKVPSPKRRVVCVMIVLAFIILNYGPMSMLEQDSRRMNPSVSPANQRRHLLG
FSAKEAQDTSDGIIQKNSYRYDHSVSNDKALMVLTEEPLLYIPPPPCQPLINTTESLRLN
HELRGWVHRHEVERTKSRRMTNNQQKTRILQGALEQGSNSQLMAVQYTETTSSISRNSGS
ELQVYYASPRSYQDFFEAIRRRGDTFYVVSFRRDHLLLPATTHNKTTRPKMSIVLPAINI
NENVINGQDYEVMMQIDCQVMDTRILHIKSSSVPPYLRDQQRNQTNTFFGSPPAATEATH
VVSTIPESLQ
Sequence length 670
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Protein processing in endoplasmic reticulum
Alzheimer disease
Parkinson disease
Amyotrophic lateral sclerosis
Pathways of neurodegeneration - multiple diseases
Lipid and atherosclerosis
  ATF6 (ATF6-alpha) activates chaperones
ATF6 (ATF6-alpha) activates chaperone genes
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Achromatopsia Achromatopsia, ACHROMATOPSIA 7 rs121918344, rs267606739, rs397515360, rs121918537, rs121918538, rs786200908, rs796051871, rs121918539, rs387906401, rs267606936, rs786200909, rs786200910, rs267606934, rs267606937, rs267606935
View all (196 more)
26063662, 26029869
Cone monochromatism Cone monochromatism rs104894912, rs121434621, rs104894914
Cone-rod dystrophy Cone-Rod Dystrophy 2, Cone rod dystrophy rs200691042, rs121908281, rs28940314, rs121434337, rs80338903, rs121909398, rs28937883, rs397515360, rs137853006, rs786205085, rs137853040, rs137853041, rs786205086, rs104894671, rs1568626209
View all (207 more)
28479318
Creutzfeldt-jakob disease New Variant Creutzfeldt-Jakob Disease, Creutzfeldt-Jakob Disease, Familial rs193922906, rs74315401, rs28933385, rs74315412, rs398122370 23349890
Unknown
Disease term Disease name Evidence References Source
Cone Dystrophy cone-rod dystrophy GenCC
Associations from Text Mining
Disease Name Relationship Type References
AA amyloidosis Associate 25444553, 31105062
Acidosis Associate 28134810
Adenocarcinoma Associate 26559273
Adenoma Stimulate 28884228
Alzheimer Disease Associate 29725981
Amyloidosis Associate 31105062
Amyotrophic Lateral Sclerosis Stimulate 29725981
Aortic Aneurysm Abdominal Associate 31239294
Aortic Aneurysm Familial Abdominal 1 Associate 37731512
Arthritis Rheumatoid Associate 39614150