Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	2262
Gene name Gene Name - the full gene name approved by the HGNC.	Glypican 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	GPC5
Synonyms (NCBI Gene) Gene synonyms aliases	-
Chromosome Chromosome number	13
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	13q31.3
Summary Summary of gene provided in NCBI Entrez Gene.	Cell surface heparan sulfate proteoglycans are composed of a membrane-associated protein core substituted with a variable number of heparan sulfate chains. Members of the glypican-related integral membrane proteoglycan family (GRIPS) contain a core protei

Show/Hide all(132)

miRTarBase ID	miRNA	Experiments	Reference
MIRT438314	hsa-miR-217	Luciferase reporter assay, Northern blot, qRT-PCR, Western blot	26098560
MIRT438314	hsa-miR-217	Luciferase reporter assay, Northern blot, qRT-PCR, Western blot	26098560
MIRT438314	hsa-miR-217	Luciferase reporter assay, Northern blot, qRT-PCR, Western blot	26098560
MIRT438314	hsa-miR-217	Luciferase reporter assay, Northern blot, qRT-PCR, Western blot	26098560
MIRT657706	hsa-miR-548ac	HITS-CLIP	23824327
MIRT657705	hsa-miR-548bb-3p	HITS-CLIP	23824327
MIRT657704	hsa-miR-548d-3p	HITS-CLIP	23824327
MIRT657703	hsa-miR-548h-3p	HITS-CLIP	23824327
MIRT657702	hsa-miR-548z	HITS-CLIP	23824327
MIRT449572	hsa-miR-548ae-3p	HITS-CLIP	23824327
MIRT449571	hsa-miR-548ah-3p	HITS-CLIP	23824327
MIRT449570	hsa-miR-548aj-3p	HITS-CLIP	23824327
MIRT449569	hsa-miR-548am-3p	HITS-CLIP	23824327
MIRT449568	hsa-miR-548aq-3p	HITS-CLIP	23824327
MIRT449567	hsa-miR-548j-3p	HITS-CLIP	23824327
MIRT449566	hsa-miR-548x-3p	HITS-CLIP	23824327
MIRT657701	hsa-miR-4637	HITS-CLIP	23824327
MIRT657700	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT657699	hsa-miR-942-5p	HITS-CLIP	23824327
MIRT657697	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT657698	hsa-miR-670-3p	HITS-CLIP	23824327
MIRT657696	hsa-miR-1238-3p	HITS-CLIP	23824327
MIRT657695	hsa-miR-6809-3p	HITS-CLIP	23824327
MIRT625757	hsa-miR-5193	HITS-CLIP	23824327
MIRT625753	hsa-miR-3124-3p	HITS-CLIP	23824327
MIRT625752	hsa-miR-642a-5p	HITS-CLIP	23824327
MIRT625751	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT625759	hsa-miR-1470	HITS-CLIP	23824327
MIRT625758	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT625757	hsa-miR-5193	HITS-CLIP	23824327
MIRT625756	hsa-miR-6734-3p	HITS-CLIP	23824327
MIRT625755	hsa-miR-3667-3p	HITS-CLIP	23824327
MIRT625754	hsa-miR-4469	HITS-CLIP	23824327
MIRT625753	hsa-miR-3124-3p	HITS-CLIP	23824327
MIRT625751	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT625750	hsa-miR-6868-3p	HITS-CLIP	23824327
MIRT625759	hsa-miR-1470	HITS-CLIP	23824327
MIRT625758	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT625757	hsa-miR-5193	HITS-CLIP	23824327
MIRT625756	hsa-miR-6734-3p	HITS-CLIP	23824327
MIRT625755	hsa-miR-3667-3p	HITS-CLIP	23824327
MIRT625754	hsa-miR-4469	HITS-CLIP	23824327
MIRT625753	hsa-miR-3124-3p	HITS-CLIP	23824327
MIRT625752	hsa-miR-642a-5p	HITS-CLIP	23824327
MIRT625751	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT625750	hsa-miR-6868-3p	HITS-CLIP	23824327
MIRT449572	hsa-miR-548ae-3p	PAR-CLIP	22100165
MIRT449571	hsa-miR-548ah-3p	PAR-CLIP	22100165
MIRT449570	hsa-miR-548aj-3p	PAR-CLIP	22100165
MIRT449569	hsa-miR-548am-3p	PAR-CLIP	22100165
MIRT449568	hsa-miR-548aq-3p	PAR-CLIP	22100165
MIRT449567	hsa-miR-548j-3p	PAR-CLIP	22100165
MIRT449566	hsa-miR-548x-3p	PAR-CLIP	22100165
MIRT449565	hsa-miR-5582-3p	PAR-CLIP	22100165
MIRT449564	hsa-miR-3133	PAR-CLIP	22100165
MIRT449563	hsa-miR-186-5p	PAR-CLIP	22100165
MIRT449562	hsa-miR-20a-3p	PAR-CLIP	22100165
MIRT449561	hsa-miR-190a-5p	PAR-CLIP	22100165
MIRT449560	hsa-miR-190b	PAR-CLIP	22100165
MIRT732315	hsa-miR-297	Luciferase reporter assay, qRT-PCR, Western blot	27554041
MIRT732315	hsa-miR-297	Luciferase reporter assay, qRT-PCR, Western blot	27554041
MIRT657706	hsa-miR-548ac	HITS-CLIP	23824327
MIRT657705	hsa-miR-548bb-3p	HITS-CLIP	23824327
MIRT657704	hsa-miR-548d-3p	HITS-CLIP	23824327
MIRT657703	hsa-miR-548h-3p	HITS-CLIP	23824327
MIRT657702	hsa-miR-548z	HITS-CLIP	23824327
MIRT449572	hsa-miR-548ae-3p	HITS-CLIP	23824327
MIRT449571	hsa-miR-548ah-3p	HITS-CLIP	23824327
MIRT449570	hsa-miR-548aj-3p	HITS-CLIP	23824327
MIRT449569	hsa-miR-548am-3p	HITS-CLIP	23824327
MIRT449568	hsa-miR-548aq-3p	HITS-CLIP	23824327
MIRT449567	hsa-miR-548j-3p	HITS-CLIP	23824327
MIRT449566	hsa-miR-548x-3p	HITS-CLIP	23824327
MIRT657701	hsa-miR-4637	HITS-CLIP	23824327
MIRT657700	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT657699	hsa-miR-942-5p	HITS-CLIP	23824327
MIRT657697	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT657698	hsa-miR-670-3p	HITS-CLIP	23824327
MIRT657696	hsa-miR-1238-3p	HITS-CLIP	23824327
MIRT657695	hsa-miR-6809-3p	HITS-CLIP	23824327
MIRT625757	hsa-miR-5193	HITS-CLIP	23824327
MIRT625753	hsa-miR-3124-3p	HITS-CLIP	23824327
MIRT625752	hsa-miR-642a-5p	HITS-CLIP	23824327
MIRT625751	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT625759	hsa-miR-1470	HITS-CLIP	23824327
MIRT625758	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT625757	hsa-miR-5193	HITS-CLIP	23824327
MIRT625756	hsa-miR-6734-3p	HITS-CLIP	23824327
MIRT625755	hsa-miR-3667-3p	HITS-CLIP	23824327
MIRT625754	hsa-miR-4469	HITS-CLIP	23824327
MIRT625753	hsa-miR-3124-3p	HITS-CLIP	23824327
MIRT625751	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT625750	hsa-miR-6868-3p	HITS-CLIP	23824327
MIRT625759	hsa-miR-1470	HITS-CLIP	23824327
MIRT625758	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT625757	hsa-miR-5193	HITS-CLIP	23824327
MIRT625756	hsa-miR-6734-3p	HITS-CLIP	23824327
MIRT625755	hsa-miR-3667-3p	HITS-CLIP	23824327
MIRT625754	hsa-miR-4469	HITS-CLIP	23824327
MIRT625753	hsa-miR-3124-3p	HITS-CLIP	23824327
MIRT625752	hsa-miR-642a-5p	HITS-CLIP	23824327
MIRT625751	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT625750	hsa-miR-6868-3p	HITS-CLIP	23824327
MIRT449572	hsa-miR-548ae-3p	PAR-CLIP	22100165
MIRT449571	hsa-miR-548ah-3p	PAR-CLIP	22100165
MIRT449570	hsa-miR-548aj-3p	PAR-CLIP	22100165
MIRT449569	hsa-miR-548am-3p	PAR-CLIP	22100165
MIRT449568	hsa-miR-548aq-3p	PAR-CLIP	22100165
MIRT449567	hsa-miR-548j-3p	PAR-CLIP	22100165
MIRT449566	hsa-miR-548x-3p	PAR-CLIP	22100165
MIRT449565	hsa-miR-5582-3p	PAR-CLIP	22100165
MIRT449564	hsa-miR-3133	PAR-CLIP	22100165
MIRT449563	hsa-miR-186-5p	PAR-CLIP	22100165
MIRT449562	hsa-miR-20a-3p	PAR-CLIP	22100165
MIRT449561	hsa-miR-190a-5p	PAR-CLIP	22100165
MIRT449560	hsa-miR-190b	PAR-CLIP	22100165
MIRT1028608	hsa-miR-1253	CLIP-seq
MIRT1028609	hsa-miR-200b	CLIP-seq
MIRT1028610	hsa-miR-200c	CLIP-seq
MIRT1028611	hsa-miR-2467-3p	CLIP-seq
MIRT1028612	hsa-miR-3653	CLIP-seq
MIRT1028613	hsa-miR-3658	CLIP-seq
MIRT1028614	hsa-miR-3678-3p	CLIP-seq
MIRT1028615	hsa-miR-429	CLIP-seq
MIRT1028616	hsa-miR-4418	CLIP-seq
MIRT1028617	hsa-miR-4436a	CLIP-seq
MIRT1028618	hsa-miR-452	CLIP-seq
MIRT1028619	hsa-miR-4676-3p	CLIP-seq
MIRT1028620	hsa-miR-509-3-5p	CLIP-seq
MIRT1028621	hsa-miR-509-5p	CLIP-seq
MIRT1028622	hsa-miR-548ag	CLIP-seq
MIRT1028623	hsa-miR-548ai	CLIP-seq

Show/Hide all(16)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	30282023, 32814053, 35512704
GO:0005576	Component	Extracellular region	IEA
GO:0005576	Component	Extracellular region	TAS
GO:0005796	Component	Golgi lumen	TAS
GO:0005886	Component	Plasma membrane	IEA
GO:0005886	Component	Plasma membrane	TAS
GO:0009966	Process	Regulation of signal transduction	IEA
GO:0009986	Component	Cell surface	IBA
GO:0016020	Component	Membrane	IEA
GO:0016020	Component	Membrane	TAS	7657705
GO:0016477	Process	Cell migration	IBA
GO:0043202	Component	Lysosomal lumen	IEA
GO:0043202	Component	Lysosomal lumen	TAS
GO:0090263	Process	Positive regulation of canonical Wnt signaling pathway	IBA
GO:0098552	Component	Side of membrane	IEA
GO:1905475	Process	Regulation of protein localization to membrane	IBA

MIM	HGNC	e!Ensembl
602446	4453	ENSG00000179399

Protein

UniProt ID

P78333

Protein name

Glypican-5 [Cleaved into: Secreted glypican-5]

Protein function

Cell surface proteoglycan that bears heparan sulfate.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01153	Glypican	12 → 570	Glypican	Family

Tissue specificity

TISSUE SPECIFICITY: In adult, primarily expressed in the brain. Also detected in fetal brain, lung and liver. {ECO:0000269|PubMed:9070915, ECO:0000269|PubMed:9331333}.

Sequence

MDAQTWPVGFRCLLLLALVGSARSEGVQTCEEVRKLFQWRLLGAVRGLPDSPRAGPDLQV
CISKKPTCCTRKMEERYQIAARQDMQQFLQTSSSTLKFLISRNAAAFQETLETLIKQAEN
YTSILFCSTYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHLIN
PGVTDSSLEYSECIRMARRDVSPFGNIPQRVMGQMGRSLLPSRTFLQALNLGIEVINTTD
YLHFSKECSRALLKMQYCPHCQGLALTKPCMGYCLNVMRGCLAHMAELNPHWHAYIRSLE
ELSDAMHGTYDIGHVLLNFHLLVNDAVLQAHLNGQKLLEQVNRICGRPVRTPTQSPRCSF
DQSKEKHGMKTTTRNSEETLANRRKEFINSLRLYRSFYGGLADQLCANELAAADGLPCWN
GEDIVKSYTQRVVGNGIKAQSGNPEVKVKGIDPVINQIIDKLKHVVQLLQGRSPKPDKWE
LLQLGSGGGMVEQVSGDCDDEDGCGGSGSGEVKRTLKITDWMPDDMNFSDVKQIHQTDTG
STLDTTGAGCAVATESMTFTLISVVMLLPGIW

Sequence length

572

Interactions

View interactions

	Reactome
			A tetrasaccharide linker sequence is required for GAG synthesis HS-GAG biosynthesis HS-GAG degradation Defective B4GALT7 causes EDS, progeroid type Defective B3GAT3 causes JDSSDHD Defective EXT2 causes exostoses 2 Defective EXT1 causes exostoses 1, TRPS2 and CHDS Defective B3GALT6 causes EDSP2 and SEMDJL1 Release of Hh-Np from the secreting cell Retinoid metabolism and transport

Show/Hide Unknown Diseases (9)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Breast Cancer	Breast cancer	N/A	N/A	GWAS
Cervical Cancer	Cervical cancer	N/A	N/A	GWAS
Colorectal Cancer	Colorectal cancer	N/A	N/A	GWAS
Endometriosis	Endometriosis	N/A	N/A	GWAS
Insomnia	Insomnia	N/A	N/A	GWAS
Multiple Sclerosis	Multiple sclerosis	N/A	N/A	GWAS
Oligodendroglioma	Oligodendroglioma	N/A	N/A	GWAS
Rheumatoid arthritis	Rheumatoid arthritis	N/A	N/A	GWAS
Tetralogy of Fallot	Tetralogy of Fallot	N/A	N/A	GWAS

Show/Hide Text Mining Associations (28)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Adenocarcinoma of Lung	Associate	27554041
Amyloidosis Hereditary Transthyretin Related	Associate	30414409
Arthritis Rheumatoid	Associate	30423114
Carcinogenesis	Inhibit	32970968
Carcinoma Endometrioid	Associate	26399219
Carcinoma Hepatocellular	Associate	25818666
Carcinoma Ovarian Epithelial	Associate	26399219
Carcinoma Pancreatic Ductal	Associate	33302876
Colorectal Neoplasms	Associate	20085586
Death	Associate	36165234
Death Sudden Cardiac	Associate	20360844
Death Sudden Cardiac	Inhibit	20360844
Drug Related Side Effects and Adverse Reactions	Associate	20085586
Lung Neoplasms	Associate	20304703, 25999661, 36165234
Lymphatic Metastasis	Inhibit	26631038
Lymphoma Mantle Cell	Associate	15498857
Melanoma	Associate	31004080
Multiple Sclerosis	Associate	19865102, 32398079
Neoplasms	Associate	20085586, 26631038, 36944188, 37410084
Nephrotic Syndrome	Associate	30414409
Prostatic Neoplasms	Associate	26631038
Squamous Cell Carcinoma of Head and Neck	Associate	25935541
Squamous Intraepithelial Lesions	Associate	37410084
Stomach Neoplasms	Associate	26098560
Stomach Neoplasms	Inhibit	35183057
Tetralogy of Fallot	Associate	23297363
Tourette Syndrome	Associate	27862604
Uterine Cervical Neoplasms	Associate	37410084

GPC5 (glypican 5)