SYCP2L (synaptonemal complex protein 2 like)

Gene
Gene miRNA Gene ontology Other IDs Protein
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
221711
Gene name Gene Name - the full gene name approved by the HGNC.
Synaptonemal complex protein 2 like
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SYCP2L
Synonyms (NCBI Gene) Gene synonyms aliases
C6orf177, NO145, POF24, dJ62D2.1
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6p24.2
miRNA miRNA information provided by mirtarbase database.
Gene miRNA Gene ontology Other IDs Protein
Show/Hide all(8)
miRTarBase ID miRNA Experiments Reference
MIRT016704 hsa-miR-335-5p Microarray 18185580
MIRT1405120 hsa-miR-200b CLIP-seq
MIRT1405121 hsa-miR-200c CLIP-seq
MIRT1405122 hsa-miR-3200-5p CLIP-seq
MIRT1405123 hsa-miR-374c CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
Gene miRNA Gene ontology Other IDs Protein
Show/Hide all(11)
GO ID Ontology Definition Evidence Reference
GO:0000775 Component Chromosome, centromeric region IEA
GO:0000779 Component Condensed chromosome, centromeric region IBA
GO:0000779 Component Condensed chromosome, centromeric region IDA 26362258
GO:0000779 Component Condensed chromosome, centromeric region IEA
GO:0000800 Component Lateral element IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
Gene miRNA Gene ontology Other IDs Protein
MIM HGNC e!Ensembl
616799 21537 ENSG00000153157
Protein
Gene miRNA Gene ontology Other IDs Protein
UniProt ID Q5T4T6
Protein name Synaptonemal complex protein 2-like (SCP-2-like) (145 kDa nucleolar protein homolog) (hsNO145)
Protein function Oocyte-specific protein that localizes to centromeres at the dictyate stage and regulates the survival of primordial oocytes.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18581 SYCP2_ARLD 27 → 197 Synaptonemal complex 2 armadillo-repeat-like domain Domain
PF18584 SYCP2_SLD 292 → 403 Synaptonemal complex 2 Spt16M-like domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the ovary (at protein level) (PubMed:17374641). In the ovaries, expressed in oocytes, including germinal vesicle oocytes, metaphase I and metaphase II oocytes (PubMed:32303603). Also expressed in testis (PubMed:32303603).
Sequence 
MQAKNKDALQPIKEDRTGKAQDDAFWLQSLITDAFHDKGFQKIKEYFQQKESHFPQKYNR
LLLYRLDRSINKELDKNEFQSVSLLLKCIQRFLVDGLKEDEPLLIRQGLIPKLVSWFERT
TGILTSEGLASDTSLICVIEDFFDTALIISRSSSEGKIQMLDSFLLSLGFLVTEKTVNHL
LQQEGLKTFNCILHAVPREERKKFPLSEGMCHLMKDLARTLLTVGDYDQQVAISEALCRL
TIKKSRDELVHKWFDDEVIAEAFKEIKDREFETDSRRFLNHLNNRLGDQRRVYSFPCIAA
FADEHEMRKPADEKLEKFWIDFNLGSQSVTFYIDNAENTLWDSVTLPKEAVMNFSITETE
KIKIFIIYLKKPMIISYKEVMKIEIHFDLQFNISQVSIQALGEDKQMLPDQTKISSELFS
KSDKEDRESPSGLERETEQAEESTNMVEFMSAEDDRCLITLHLNDQSEPPVIGEPASDSH
LQPVPPFGVPDFPQQPKSHYRKHLFSESNQDSSTSELSWTSNQKKKSLKSYSSRKKTRTR
SNLRILPVFPPSSGSGHEKDQAKLLSPSEKEIPEQNNTTSPKTSEQKFQDSFAFLTAEDS
AQKTELQDPHSLSELSSLKHSEDEEKPKIVNQESLTESTSLKHKLRNLEDKDIPEGSFAK
SQQSRLEEEVAPGSPFSITEERELPEGISTSSLEVVPENLNGSAILPTFENFTKKRKRKY
ELRYRKRPFNSENAKKAPDCLIKLLNQMQLFRLNKLERFQNLVLQELSSLKQDIQALEHL
EKEVLEFWGKQSADLQSFCDLQVLRFNSTQTS
Sequence length 812
Interactions View interactions
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