Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	221416
Gene name Gene Name - the full gene name approved by the HGNC.	Long intergenic non-protein coding RNA 3040
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	LINC03040
Synonyms (NCBI Gene) Gene synonyms aliases	C6orf223
Chromosome Chromosome number	6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	6p21.1

Show/Hide all(271)

miRTarBase ID	miRNA	Experiments	Reference
MIRT017127	hsa-miR-335-5p	Microarray	18185580
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	19536157
MIRT716386	hsa-miR-6072	HITS-CLIP	19536157
MIRT716385	hsa-miR-6891-3p	HITS-CLIP	19536157
MIRT716384	hsa-miR-4502	HITS-CLIP	19536157
MIRT716383	hsa-miR-3120-5p	HITS-CLIP	19536157
MIRT716382	hsa-miR-6716-5p	HITS-CLIP	19536157
MIRT716381	hsa-miR-3909	HITS-CLIP	19536157
MIRT716380	hsa-miR-6852-3p	HITS-CLIP	19536157
MIRT716379	hsa-miR-6888-3p	HITS-CLIP	19536157
MIRT716378	hsa-miR-1233-3p	HITS-CLIP	19536157
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	19536157
MIRT606769	hsa-miR-4258	HITS-CLIP	22927820
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	22927820
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	22927820
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	22927820
MIRT606938	hsa-miR-4279	HITS-CLIP	22927820
MIRT606769	hsa-miR-4258	HITS-CLIP	23706177
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23706177
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23706177
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	23706177
MIRT606938	hsa-miR-4279	HITS-CLIP	23706177
MIRT606769	hsa-miR-4258	HITS-CLIP	23706177
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23706177
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23706177
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	23706177
MIRT606938	hsa-miR-4279	HITS-CLIP	23706177
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23824327
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23824327
MIRT606938	hsa-miR-4279	HITS-CLIP	23824327
MIRT606769	hsa-miR-4258	HITS-CLIP	23824327
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23824327
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23824327
MIRT606938	hsa-miR-4279	HITS-CLIP	23824327
MIRT606769	hsa-miR-4258	HITS-CLIP	23824327
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23824327
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23824327
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT606938	hsa-miR-4279	HITS-CLIP	23824327
MIRT606769	hsa-miR-4258	HITS-CLIP	24906430
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	24906430
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	24906430
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	24906430
MIRT606938	hsa-miR-4279	HITS-CLIP	24906430
MIRT606769	hsa-miR-4258	HITS-CLIP	24906430
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	24906430
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	24906430
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	24906430
MIRT606938	hsa-miR-4279	HITS-CLIP	24906430
MIRT606769	hsa-miR-4258	HITS-CLIP	24906430
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	24906430
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	24906430
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	24906430
MIRT606938	hsa-miR-4279	HITS-CLIP	24906430
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	24906430
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	24906430
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	24906430
MIRT606938	hsa-miR-4279	HITS-CLIP	24906430
MIRT606769	hsa-miR-4258	HITS-CLIP	24906430
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	24906430
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	24906430
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	24906430
MIRT606938	hsa-miR-4279	HITS-CLIP	24906430
MIRT606769	hsa-miR-4258	HITS-CLIP	24906430
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	24906430
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	24906430
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	24906430
MIRT497060	hsa-miR-129-5p	PAR-CLIP	22291592
MIRT497059	hsa-miR-203a-3p	PAR-CLIP	22291592
MIRT497058	hsa-miR-4480	PAR-CLIP	22291592
MIRT497057	hsa-miR-192-3p	PAR-CLIP	22291592
MIRT497056	hsa-miR-4776-3p	PAR-CLIP	22291592
MIRT606769	hsa-miR-4258	HITS-CLIP	27418678
MIRT606769	hsa-miR-4258	HITS-CLIP	27418678
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	27418678
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	27418678
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	27418678
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	27418678
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	27418678
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	27418678
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	28735896
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	19536157
MIRT716386	hsa-miR-6072	HITS-CLIP	19536157
MIRT716385	hsa-miR-6891-3p	HITS-CLIP	19536157
MIRT716384	hsa-miR-4502	HITS-CLIP	19536157
MIRT716383	hsa-miR-3120-5p	HITS-CLIP	19536157
MIRT716382	hsa-miR-6716-5p	HITS-CLIP	19536157
MIRT716381	hsa-miR-3909	HITS-CLIP	19536157
MIRT716380	hsa-miR-6852-3p	HITS-CLIP	19536157
MIRT716379	hsa-miR-6888-3p	HITS-CLIP	19536157
MIRT716378	hsa-miR-1233-3p	HITS-CLIP	19536157
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	19536157
MIRT606769	hsa-miR-4258	HITS-CLIP	22927820
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	22927820
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	22927820
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	22927820
MIRT606938	hsa-miR-4279	HITS-CLIP	22927820
MIRT606769	hsa-miR-4258	HITS-CLIP	23706177
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23706177
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23706177
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	23706177
MIRT606938	hsa-miR-4279	HITS-CLIP	23706177
MIRT606769	hsa-miR-4258	HITS-CLIP	23706177
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23706177
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23706177
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	23706177
MIRT606938	hsa-miR-4279	HITS-CLIP	23706177
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23824327
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23824327
MIRT606938	hsa-miR-4279	HITS-CLIP	23824327
MIRT606769	hsa-miR-4258	HITS-CLIP	23824327
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23824327
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23824327
MIRT606938	hsa-miR-4279	HITS-CLIP	23824327
MIRT606769	hsa-miR-4258	HITS-CLIP	23824327
MIRT606768	hsa-miR-7108-3p	HITS-CLIP	23824327
MIRT606767	hsa-miR-6869-3p	HITS-CLIP	23824327
MIRT606766	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT606938	hsa-miR-4279	HITS-CLIP	23824327
MIRT497060	hsa-miR-129-5p	PAR-CLIP	22291592
MIRT497059	hsa-miR-203a-3p	PAR-CLIP	22291592
MIRT497058	hsa-miR-4480	PAR-CLIP	22291592
MIRT497057	hsa-miR-192-3p	PAR-CLIP	22291592
MIRT497056	hsa-miR-4776-3p	PAR-CLIP	22291592
MIRT851410	hsa-miR-1204	CLIP-seq
MIRT851411	hsa-miR-2681	CLIP-seq
MIRT851412	hsa-miR-3136-3p	CLIP-seq
MIRT851413	hsa-miR-3144-5p	CLIP-seq
MIRT851414	hsa-miR-3191	CLIP-seq
MIRT851415	hsa-miR-3922-5p	CLIP-seq
MIRT851416	hsa-miR-4652-5p	CLIP-seq
MIRT851417	hsa-miR-4688	CLIP-seq
MIRT851418	hsa-miR-4753-5p	CLIP-seq
MIRT851419	hsa-miR-486-3p	CLIP-seq
MIRT851420	hsa-miR-548ad	CLIP-seq
MIRT851421	hsa-miR-663b	CLIP-seq
MIRT851422	hsa-miR-1225-3p	CLIP-seq
MIRT851423	hsa-miR-1226	CLIP-seq
MIRT851424	hsa-miR-1253	CLIP-seq
MIRT851425	hsa-miR-1254	CLIP-seq
MIRT851426	hsa-miR-1304	CLIP-seq
MIRT851427	hsa-miR-3064-3p	CLIP-seq
MIRT851428	hsa-miR-3116	CLIP-seq
MIRT851429	hsa-miR-3121-5p	CLIP-seq
MIRT851430	hsa-miR-3126-5p	CLIP-seq
MIRT851431	hsa-miR-3150a-3p	CLIP-seq
MIRT851432	hsa-miR-3156-3p	CLIP-seq
MIRT851433	hsa-miR-3175	CLIP-seq
MIRT851434	hsa-miR-3178	CLIP-seq
MIRT851435	hsa-miR-3919	CLIP-seq
MIRT851436	hsa-miR-4252	CLIP-seq
MIRT851437	hsa-miR-4283	CLIP-seq
MIRT851438	hsa-miR-4286	CLIP-seq
MIRT851439	hsa-miR-4301	CLIP-seq
MIRT851440	hsa-miR-4323	CLIP-seq
MIRT851441	hsa-miR-4419a	CLIP-seq
MIRT851442	hsa-miR-4462	CLIP-seq
MIRT851443	hsa-miR-4469	CLIP-seq
MIRT851444	hsa-miR-4486	CLIP-seq
MIRT851445	hsa-miR-4493	CLIP-seq
MIRT851446	hsa-miR-4510	CLIP-seq
MIRT851447	hsa-miR-4705	CLIP-seq
MIRT851448	hsa-miR-4715-3p	CLIP-seq
MIRT851449	hsa-miR-4733-3p	CLIP-seq
MIRT851450	hsa-miR-4758-3p	CLIP-seq
MIRT851451	hsa-miR-483-3p	CLIP-seq
MIRT851452	hsa-miR-532-3p	CLIP-seq
MIRT851453	hsa-miR-642a	CLIP-seq
MIRT851454	hsa-miR-661	CLIP-seq
MIRT851455	hsa-miR-939	CLIP-seq
MIRT1952470	hsa-miR-2467-5p	CLIP-seq
MIRT851431	hsa-miR-3150a-3p	CLIP-seq
MIRT851433	hsa-miR-3175	CLIP-seq
MIRT1952471	hsa-miR-342-5p	CLIP-seq
MIRT1952472	hsa-miR-4651	CLIP-seq
MIRT1952473	hsa-miR-4664-5p	CLIP-seq
MIRT1952474	hsa-miR-4731-5p	CLIP-seq
MIRT1952475	hsa-miR-491-5p	CLIP-seq
MIRT1952476	hsa-miR-608	CLIP-seq
MIRT1952477	hsa-miR-760	CLIP-seq
MIRT851455	hsa-miR-939	CLIP-seq
MIRT1952478	hsa-miR-1275	CLIP-seq
MIRT851429	hsa-miR-3121-5p	CLIP-seq
MIRT1952479	hsa-miR-4260	CLIP-seq
MIRT1952480	hsa-miR-4270	CLIP-seq
MIRT1952481	hsa-miR-4441	CLIP-seq
MIRT1952482	hsa-miR-4525	CLIP-seq
MIRT1952483	hsa-miR-4665-5p	CLIP-seq
MIRT1952484	hsa-miR-4723-5p	CLIP-seq
MIRT1952485	hsa-miR-622	CLIP-seq
MIRT1952486	hsa-miR-625	CLIP-seq
MIRT2190326	hsa-miR-1207-5p	CLIP-seq
MIRT851423	hsa-miR-1226	CLIP-seq
MIRT2190327	hsa-miR-150	CLIP-seq
MIRT851433	hsa-miR-3175	CLIP-seq
MIRT2190328	hsa-miR-3184	CLIP-seq
MIRT2190329	hsa-miR-3974	CLIP-seq
MIRT2190330	hsa-miR-3978	CLIP-seq
MIRT2190331	hsa-miR-423-5p	CLIP-seq
MIRT2190332	hsa-miR-4269	CLIP-seq
MIRT851440	hsa-miR-4323	CLIP-seq
MIRT851441	hsa-miR-4419a	CLIP-seq
MIRT851446	hsa-miR-4510	CLIP-seq
MIRT2190333	hsa-miR-4514	CLIP-seq
MIRT2190334	hsa-miR-4649-3p	CLIP-seq
MIRT851417	hsa-miR-4688	CLIP-seq
MIRT2190335	hsa-miR-4692	CLIP-seq
MIRT851447	hsa-miR-4705	CLIP-seq
MIRT1952484	hsa-miR-4723-5p	CLIP-seq
MIRT851449	hsa-miR-4733-3p	CLIP-seq
MIRT2190336	hsa-miR-4742-5p	CLIP-seq
MIRT2190337	hsa-miR-4763-3p	CLIP-seq
MIRT851419	hsa-miR-486-3p	CLIP-seq
MIRT1952485	hsa-miR-622	CLIP-seq
MIRT2385296	hsa-miR-3127-5p	CLIP-seq
MIRT2435965	hsa-miR-1184	CLIP-seq
MIRT2435966	hsa-miR-1205	CLIP-seq
MIRT2435967	hsa-miR-1231	CLIP-seq
MIRT2435968	hsa-miR-3158-5p	CLIP-seq
MIRT2435969	hsa-miR-3166	CLIP-seq
MIRT2435970	hsa-miR-346	CLIP-seq
MIRT2435971	hsa-miR-4288	CLIP-seq
MIRT2435972	hsa-miR-4771	CLIP-seq
MIRT2435973	hsa-miR-589	CLIP-seq
MIRT2435974	hsa-miR-632	CLIP-seq
MIRT2445803	hsa-miR-1343	CLIP-seq
MIRT2445804	hsa-miR-3127-3p	CLIP-seq
MIRT851413	hsa-miR-3144-5p	CLIP-seq
MIRT851414	hsa-miR-3191	CLIP-seq
MIRT2445805	hsa-miR-3545-5p	CLIP-seq
MIRT2445806	hsa-miR-3679-3p	CLIP-seq
MIRT2445807	hsa-miR-3938	CLIP-seq
MIRT851416	hsa-miR-4652-5p	CLIP-seq
MIRT2445808	hsa-miR-4667-5p	CLIP-seq
MIRT2445809	hsa-miR-4676-5p	CLIP-seq
MIRT2445810	hsa-miR-4700-5p	CLIP-seq
MIRT2445811	hsa-miR-500a	CLIP-seq
MIRT2445812	hsa-miR-575	CLIP-seq
MIRT2445803	hsa-miR-1343	CLIP-seq
MIRT851413	hsa-miR-3144-5p	CLIP-seq
MIRT851414	hsa-miR-3191	CLIP-seq
MIRT2445805	hsa-miR-3545-5p	CLIP-seq
MIRT851416	hsa-miR-4652-5p	CLIP-seq
MIRT2445808	hsa-miR-4667-5p	CLIP-seq
MIRT2445809	hsa-miR-4676-5p	CLIP-seq
MIRT2445810	hsa-miR-4700-5p	CLIP-seq
MIRT2445812	hsa-miR-575	CLIP-seq
MIRT2435965	hsa-miR-1184	CLIP-seq
MIRT2435966	hsa-miR-1205	CLIP-seq
MIRT2435967	hsa-miR-1231	CLIP-seq
MIRT2435968	hsa-miR-3158-5p	CLIP-seq
MIRT2435969	hsa-miR-3166	CLIP-seq
MIRT2435970	hsa-miR-346	CLIP-seq
MIRT2435971	hsa-miR-4288	CLIP-seq
MIRT2435972	hsa-miR-4771	CLIP-seq
MIRT2435973	hsa-miR-589	CLIP-seq
MIRT2435974	hsa-miR-632	CLIP-seq
MIRT2677027	hsa-miR-4329	CLIP-seq
MIRT2677028	hsa-miR-4434	CLIP-seq
MIRT2677029	hsa-miR-4516	CLIP-seq
MIRT2677030	hsa-miR-4531	CLIP-seq
MIRT2677031	hsa-miR-4738-3p	CLIP-seq
MIRT2677032	hsa-miR-4786-5p	CLIP-seq
MIRT2677033	hsa-miR-4802-5p	CLIP-seq
MIRT2677034	hsa-miR-769-5p	CLIP-seq

MIM	HGNC	e!Ensembl
HGNC	N/A	HGNC

Protein

UniProt ID

Q8N319

Protein name

Uncharacterized protein LINC03040

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF17704	DUF5550	1 → 123		Family

Sequence

MMPLAEAGALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSV
SGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGP
VERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCR
PLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGAGPTR
RN

Sequence length

242

Interactions

View interactions

Show/Hide Unknown Diseases (1)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Exudative Macular Degeneration	Exudative age-related macular degeneration	N/A	N/A	GWAS

LINC03040 (long intergenic non-protein coding RNA 3040)