Gene Gene information from NCBI Gene database.
Entrez ID 2186
Gene name Bromodomain PHD finger transcription factor
Gene symbol BPTF
Synonyms (NCBI Gene)
FAC1FALZNEDDFLNURF301
Chromosome 17
Chromosome location 17q24.2
Summary This gene was identified by the reactivity of its encoded protein to a monoclonal antibody prepared against brain homogenates from patients with Alzheimer`s disease. Analysis of the original protein (fetal Alz-50 reactive clone 1, or FAC1), identified as
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs753044214 A>-,AA Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs782736894 T>C,G Likely-pathogenic, pathogenic Missense variant, genic downstream transcript variant, coding sequence variant
rs1135401778 T>- Pathogenic Frameshift variant, coding sequence variant, genic upstream transcript variant, non coding transcript variant
rs1158151918 C>A,T Pathogenic Coding sequence variant, genic downstream transcript variant, synonymous variant, stop gained
rs1425998598 G>A,C Likely-pathogenic Non coding transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
459
miRTarBase ID miRNA Experiments Reference
MIRT018571 hsa-miR-335-5p Microarray 18185580
MIRT052582 hsa-let-7a-5p CLASH 23622248
MIRT051824 hsa-let-7c-5p CLASH 23622248
MIRT050239 hsa-miR-25-3p CLASH 23622248
MIRT047286 hsa-miR-181b-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 10727212
GO:0000785 Component Chromatin IDA 27141965
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0001892 Process Embryonic placenta development IEA
GO:0005515 Function Protein binding IPI 14609955, 15640247, 21596426, 22729083, 35271311
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601819 3581 ENSG00000171634
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q12830
Protein name Nucleosome-remodeling factor subunit BPTF (Bromodomain and PHD finger-containing transcription factor) (Fetal Alz-50 clone 1 protein) (Fetal Alzheimer antigen)
Protein function Regulatory subunit of the ATP-dependent NURF-1 and NURF-5 ISWI chromatin remodeling complexes, which form ordered nucleosome arrays on chromatin and facilitate access to DNA during DNA-templated processes such as DNA replication, transcription,
PDB 2F6J , 2F6N , 2FSA , 2FUI , 2FUU , 2RI7 , 3QZS , 3QZT , 3QZV , 3UV2 , 5H6Y , 5R4G , 5R4H , 5R4I , 5R4J , 5R4K , 5R4L , 5R4M , 5R4N , 5R4O , 6AZE , 6LU5 , 6LU6 , 7DMY , 7DN4 , 7F5D , 7F5E , 7JT4 , 7K6R , 7K6S , 7KDW , 7KDZ , 7LP0 , 7LPK , 7LRK , 7LRO , 7M2E , 7RWN , 7RWO , 7RWP , 7RWQ , 7VD4 , 8AG2 , 8F6G , 8OU2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02791 DDT 241 297 DDT domain Family
PF00628 PHD 392 437 PHD-finger Domain
PF15613 WSD 456 524 Williams-Beuren syndrome DDT (WSD), D-TOX E motif Family
PF00628 PHD 2869 2918 PHD-finger Domain
PF00439 Bromodomain 2936 3019 Bromodomain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in testis. Present in kidney, liver and brain. In the brain, highest levels are found in motor cortex (at protein level). {ECO:0000269|PubMed:10662542, ECO:0000269|PubMed:10727212, ECO:000026
Sequence
MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAP
KTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAARRA
VNKVVYDDHESEEEEEEEDMVSEEEEEEDGDAEETQDSEDDEEDEMEEDDDDSDYPEEME
DDDDDASYCTESSFRSHSTYSSTPGRRKPRVHRPRSPILEEKDIPPLEFPKSSEDLMVPN
EHIMNVIAIYEVLRNFGTVLRLSPFRFEDFCAALVSQEQCTLMAEMHVVLLKAVLREEDT
SNTTFGPADLKDSVNSTLYFIDGMTWPEVLRVYCESDKEYHHVLPYQEAEDYPYGPVENK
IKVLQFLVDQFLTTNIAREELMSEGVIQYDDHCRVCHKLGDLLCCETCSAVYHLECVKPP
LEEVPEDEWQCEVCVAH
KVPGVTDCVAEIQKNKPYIRHEPIGYDRSRRKYWFLNRRLIIE
EDTENENEKKIWYYSTKVQLAELIDCLDKDYWEAELCKILEEMR
EEIHRHMDITEDLTNK
ARGSNKSFLAAANEEILESIRAKKGDIDNVKSPEETEKDKNETENDSKDAEKNREEFEDQ
SLEKDSDDKTPDDDPEQGKSEEPTEVGDKGNSVSANLGDNTTNATSEETSPSEGRSPVGC
LSETPDSSNMAEKKVASELPQDVPEEPNKTCESSNTSATTTSIQPNLENSNSSSELNSSQ
SESAKAADDPENGERESHTPVSIQEEIVGDFKSEKSNGELSESPGAGKGASGSTRIITRL
RNPDSKLSQLKSQQVAAAAHEANKLFKEGKEVLVVNSQGEISRLSTKKEVIMKGNINNYF
KLGQEGKYRVYHNQYSTNSFALNKHQHREDHDKRRHLAHKFCLTPAGEFKWNGSVHGSKV
LTISTLRLTITQLENNIPSSFLHPNWASHRANWIKAVQMCSKPREFALALAILECAVKPV
VMLPIWRESLGHTRLHRMTSIEREEKEKVKKKEKKQEEEETMQQATWVKYTFPVKHQVWK
QKGEEYRVTGYGGWSWISKTHVYRFVPKLPGNTNVNYRKSLEGTKNNMDENMDESDKRKC
SRSPKKIKIEPDSEKDEVKGSDAAKGADQNEMDISKITEKKDQDVKELLDSDSDKPCKEE
PMEVDDDMKTESHVNCQESSQVDVVNVSEGFHLRTSYKKKTKSSKLDGLLERRIKQFTLE
EKQRLEKIKLEGGIKGIGKTSTNSSKNLSESPVITKAKEGCQSDSMRQEQSPNANNDQPE
DLIQGCSESDSSVLRMSDPSHTTNKLYPKDRVLDDVSIRSPETKCPKQNSIENDIEEKVS
DLASRGQEPSKSKTKGNDFFIDDSKLASADDIGTLICKNKKPLIQEESDTIVSSSKSALH
SSVPKSTNDRDATPLSRAMDFEGKLGCDSESNSTLENSSDTVSIQDSSEEDMIVQNSNES
ISEQFRTREQDVEVLEPLKCELVSGESTGNCEDRLPVKGTEANGKKPSQQKKLEERPVNK
CSDQIKLKNTTDKKNNENRESEKKGQRTSTFQINGKDNKPKIYLKGECLKEISESRVVSG
NVEPKVNNINKIIPENDIKSLTVKESAIRPFINGDVIMEDFNERNSSETKSHLLSSSDAE
GNYRDSLETLPSTKESDSTQTTTPSASCPESNSVNQVEDMEIETSEVKKVTSSPITSEEE
SNLSNDFIDENGLPINKNENVNGESKRKTVITEVTTMTSTVATESKTVIKVEKGDKQTVV
SSTENCAKSTVTTTTTTVTKLSTPSTGGSVDIISVKEQSKTVVTTTVTDSLTTTGGTLVT
SMTVSKEYSTRDKVKLMKFSRPKKTRSGTALPSYRKFVTKSSKKSIFVLPNDDLKKLARK
GGIREVPYFNYNAKPALDIWPYPSPRPTFGITWRYRLQTVKSLAGVSLMLRLLWASLRWD
DMAAKAPPGGGTTRTETSETEITTTEIIKRRDVGPYGIRSEYCIRKIICPIGVPETPKET
PTPQRKGLRSSALRPKRPETPKQTGPVIIETWVAEEELELWEIRAFAERVEKEKAQAVEQ
QAKKRLEQQKPTVIATSTTSPTSSTTSTISPAQKVMVAPISGSVTTGTKMVLTTKVGSPA
TVTFQQNKNFHQTFATWVKQGQSNSGVVQVQQKVLGIIPSSTGTSQQTFTSFQPRTATVT
IRPNTSGSGGTTSNSQVITGPQIRPGMTVIRTPLQQSTLGKAIIRTPVMVQPGAPQQVMT
QIIRGQPVSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRPQQGQVKLTMAQLTQ
LTQGHGGNQGLTVVIQGQGQTTGQLQLIPQGVTVLPGPGQQLMQAAMPNGTVQRFLFTPL
ATTATTASTTTTTVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSSSVGPAEAQPQTAQ
PSAQPQPQTQPQSPAQPEVQTQPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQSQPQSN
VQGQSPVRVQSPSQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHTSLQIPSQGQPQSQ
PQVQSSTQTLSSGQTLNQVTVSSPSRPQLQIQQPQPQVIAVPQLQQQVQVLSQIQSQVVA
QIQAQQSGVPQQIKLQLPIQIQQSSAVQTHQIQNVVTVQAASVQEQLQRVQQLRDQQQKK
KQQQIEIKREHTLQASNQSEIIQKQVVMKHNAVIEHLKQKKSMTPAEREENQRMIVCNQV
MKYILDKIDKEEKQAAKKRKREESVEQKRSKQNATKLSALLFKHKEQLRAEILKKRALLD
KDLQIEVQEELKRDLKIKKEKDLMQLAQATAVAAPCPPVTPAPPAPPAPPPSPPPPPAVQ
HTGLLSTPTLPAASQKRKREEEKDSSSKSKKKKMISTTSKETKKDTKLYCICKTPYDESK
FYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST
EDAMTVLTPLTEKDYEGLKRVL
RSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIF
DNCRYYNPSDSPFYQCAEV
LESFFVQKLKGFKASRSHNNKLQSTAS
Sequence length 3046
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  ATP-dependent chromatin remodeling  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
210
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Expressive language delay Pathogenic; Likely pathogenic rs1135401778, rs1555639076, rs1555639411, rs1555649483, rs1555652383, rs1425998598, rs782736894, rs1555693714 RCV000577907
RCV000577876
RCV000577919
RCV000577909
RCV000577888
RCV000577877
RCV000577896
RCV000577911
Global developmental delay Pathogenic; Likely pathogenic rs1135401778, rs1555639076, rs1555639411, rs1555649483, rs1555652383, rs1425998598, rs782736894, rs1555693714 RCV000577907
RCV000577876
RCV000577919
RCV000577909
RCV000577888
RCV000577877
RCV000577896
RCV000577911
Intellectual disability Pathogenic rs1135401778 RCV000496129
Neurodevelopmental delay Likely pathogenic rs2147954548 RCV002274319
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs202146930 RCV005928784
BPTF-related disorder Benign; Likely benign; Conflicting classifications of pathogenicity; Uncertain significance rs868242186, rs1055192173, rs554343942, rs142960950, rs148696633, rs190883344, rs782326693, rs906413939, rs751039972, rs762904421, rs35711041, rs73351760, rs142703799, rs782130471, rs140942173
View all (40 more)
RCV003948687
RCV003926326
RCV003926398
RCV003943752
RCV003946270
RCV003946312
RCV003946343
RCV003926440
RCV003943489
RCV003936302
RCV003926439
RCV003916523
RCV003943490
RCV003903810
RCV003906307
RCV003903798
RCV003936348
RCV003926496
RCV003961294
RCV003926614
RCV003943687
RCV003900883
RCV003946383
RCV003946462
RCV003419207
RCV003419212
RCV003402323
RCV003418991
RCV003397272
RCV003408344
RCV003408764
RCV003420917
RCV003394337
RCV004741498
RCV003980900
RCV003981051
RCV003909205
RCV003896591
RCV003899027
RCV003894618
RCV003982709
RCV003896384
RCV003944200
RCV003981210
RCV003936998
RCV003924207
RCV003946763
RCV003954488
RCV003957379
RCV003959398
RCV003967017
RCV003976414
RCV003916086
RCV003935959
RCV003940474
RCV003942867
BPTF-related neurodevelopmental disorder Uncertain significance rs1168961811 RCV001270802
Cervical cancer Benign rs202146930 RCV005928785
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 27501781, 28025329, 36529788
Arthritis Rheumatoid Associate 34079550
Autistic Disorder Associate 30755392
Brain Diseases Associate 33522091
Breast Neoplasms Associate 24884718, 31278301
Carcinoma Adenoid Cystic Associate 28820917
Carcinoma Non Small Cell Lung Associate 36529788
Carcinoma Renal Cell Associate 33232269, 36367018
Colorectal Neoplasms Associate 35342352
Developmental Disabilities Associate 30755392