Gene Gene information from NCBI Gene database.
Entrez ID 2175
Gene name FA complementation group A
Gene symbol FANCA
Synonyms (NCBI Gene)
FAFA-HFA1FAAFACAFAHFANCH
Chromosome 16
Chromosome location 16q24.3
Summary The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FAN
SNPs SNP information provided by dbSNP.
182
SNP ID Visualize variation Clinical significance Consequence
rs1800338 T>C Likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, genic downstream transcript variant, coding sequence variant
rs9282684 T>C,G Conflicting-interpretations-of-pathogenicity, uncertain-significance Genic downstream transcript variant, intron variant
rs17233141 G>C Pathogenic, benign-likely-benign, likely-benign Genic downstream transcript variant, missense variant, coding sequence variant
rs34885858 C>A,G Likely-pathogenic Genic downstream transcript variant, splice donor variant
rs121907930 C>T Pathogenic Intron variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
233
miRTarBase ID miRNA Experiments Reference
MIRT016287 hsa-miR-193b-3p Microarray 20304954
MIRT050966 hsa-miR-17-5p CLASH 23622248
MIRT437350 hsa-miR-503-5p LacZ reporter assayqRT-PCR 24486548
MIRT683369 hsa-miR-4438 HITS-CLIP 23313552
MIRT683368 hsa-miR-3943 HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
E2F1 Activation 18438432
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IDA 22343915
GO:0005515 Function Protein binding IPI 10627486, 10652215, 11063725, 11726552, 12571280, 12649160, 16189514, 17289582, 17396147, 17474147, 22266823, 22343915, 22705371, 28514442, 31467278, 32814053, 33961781, 35271311, 37398436
GO:0005634 Component Nucleus IDA 11726552
GO:0005634 Component Nucleus IEA
GO:0005634 Component Nucleus TAS 9398857
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607139 3582 ENSG00000187741
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O15360
Protein name Fanconi anemia group A protein (Protein FACA)
Protein function DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May be involved in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability.
PDB 7KZP , 7KZQ , 7KZR , 7KZS , 7KZT , 7KZV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15865 Fanconi_A_N 170 524 Fanconi anaemia group A protein N terminus Family
PF03511 Fanconi_A 1254 1316 Fanconi anaemia group A protein Family
Sequence
MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL
LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS
VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE
AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ
MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRCWFG
VFSGHTLGSVISTDPLKRFFSHTLTQILTHSPVLKASDAVQMQREWSFARTHPLLTSLYR
RLFVMLSAEELVGHLQEVLETQEVHWQRVLSFVSALVVCFPEAQQLLEDWVARLMAQAFE
SCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFGSTRGYHGCSKKALVFLFTFLSEL
VPFESPRYLQVHILHPPLVPGKYRSLLTDYISLAKTRLADLKVS
IENMGLYEDLSSAGDI
TEPHSQALQDVEKAIMVFEHTGNIPVTVMEASIFRRPYYVSHFLPALLTPRVLPKVPDSR
VAFIESLKRADKIPPSLYSTYCQACSAAEEKPEDAALGVRAEPNSAEEPLGQLTAALGEL
RASMTDPSQRDVISAQVAVISERLRAVLGHNEDDSSVEISKIQLSINTPRLEPREHMAVD
LLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPH
VLGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPALFDSLLTCRTRDSLFFCLKFCTAA
ISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFSEARQPLSEEDVASLSWRPLHLPS
ADWQRAALSLWTHRTFREVLKEEDVHLTYQDWLHLELEIQPEADALSDTERQDFHQWAIH
EHFLPESSASGGCDGDLQAACTILVNALMDFHQSSRSYDHSENSDLVFGGRTGNEDIISR
LQEMVADLELQQDLIVPLGHTPSQEHFLFEIFRRRLQALTSGWSVAASLQRQRELLMYKR
ILLRLPSSVLCGSSFQAEQPITARCEQFFHLVNSEMRNFCSHGGALTQDITAHFFRGLLN
ACLRSRDPSLMVDFILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSPLPRELQKL
QEGRQFASDFLSPEAASPAPNPDWLSAAALHFAIQQVREENIRKQLKKLDCEREELLVFL
FFFSLMGLLSSHLTSNSTTDLPKAFHVCAAILECLEKRKISWLALFQLTESDLRLG
RLLL
RVAPDQHTRLLPFAFYSLLSYFHEDAAIREEAFLHVAVDMYLKLVQLFVAGDTSTVSPPA
GRSLELKGQGNPVELITKARLFLLQLIPRCPKKSFSHVAELLADRGDCDPEVSAALQSRQ
QAAPDADLSQEPHLF
Sequence length 1455
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Fanconi anemia pathway   Fanconi Anemia Pathway
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
6212
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormality of blood and blood-forming tissues Likely pathogenic; Pathogenic rs2039260545, rs2143529990 RCV001814541
RCV001814564
Colorectal cancer Pathogenic rs751266148 RCV005901464
FANCA-related disorder Likely pathogenic; Pathogenic rs1183256870, rs1403231932, rs1336834251, rs148100796, rs775388912, rs397507552, rs747851434, rs2544126105, rs2544156632, rs1437697372, rs1432988639, rs751266148, rs761341952, rs753063086, rs372254398
View all (7 more)
RCV004743442
RCV003941129
RCV003401739
RCV003925189
RCV003395342
RCV004742211
RCV003398432
RCV004744458
RCV003399980
RCV003902177
RCV003935400
RCV003420183
RCV004742561
RCV003892520
RCV004742565
RCV004742563
RCV003892569
RCV003396401
RCV003393883
RCV004726975
RCV003405458
RCV004727049
Fanconi anemia Likely pathogenic; Pathogenic rs891323617, rs2062046121, rs2040074214, rs1183256870, rs2143140176, rs2143261385, rs2143351760, rs2143433058, rs1316078638, rs2143656696, rs1343463467, rs761988162, rs2151714603, rs1567598488, rs2143137762
View all (476 more)
RCV001376795
RCV001349630
RCV001376747
RCV001377928
RCV001377023
RCV001376768
RCV001379771
RCV001377504
RCV001378190
RCV001379921
RCV001379431
RCV001380733
RCV001383918
RCV001387687
RCV001389759
RCV001387087
RCV001389972
RCV001388012
RCV001382609
RCV001389941
RCV001383442
RCV001382301
RCV001387266
RCV001383871
RCV001388076
RCV001387976
RCV001390317
RCV001380480
RCV001382784
RCV001385308
RCV001383443
RCV001390354
RCV001385941
RCV001388440
RCV001381966
RCV001380592
RCV001383452
RCV002568228
RCV002570638
RCV003523097
RCV001615348
RCV001615357
RCV001615366
RCV001615367
RCV002544206
RCV002034561
RCV002544245
RCV003829174
RCV002541143
RCV002544246
RCV001868846
RCV001806722
RCV003635979
RCV001869794
RCV001844451
RCV001844452
RCV001894696
RCV001974185
RCV002009595
RCV001957284
RCV001928441
RCV001945161
RCV002032199
RCV001939405
RCV001941703
RCV001930544
RCV001875644
RCV001889270
RCV000474583
RCV001386991
RCV001950861
RCV002012997
RCV002012876
RCV001952376
RCV001953882
RCV002013340
RCV001943582
RCV001975171
RCV001910557
RCV001901150
RCV002004592
RCV002028818
RCV001919985
RCV001972224
RCV001865166
RCV001993272
RCV002000221
RCV001993157
RCV002019041
RCV001999997
RCV002037771
RCV002037804
RCV001906162
RCV001993361
RCV001945824
RCV001939484
RCV001939493
RCV001939553
RCV001880678
RCV001946961
RCV001972472
RCV001953458
RCV001951051
RCV001970064
RCV002025307
RCV002025367
RCV001898811
RCV002000789
RCV002019381
RCV001951428
RCV001940793
RCV001958747
RCV002042193
RCV001906832
RCV001944168
RCV001921935
RCV001946179
RCV001918541
RCV002027339
RCV001980940
RCV003522940
RCV002255860
RCV002258493
RCV002271829
RCV002282807
RCV003635984
RCV003097710
RCV005096135
RCV000463426
RCV001046987
RCV000630905
RCV001851619
RCV000168439
RCV000168438
RCV000168293
RCV000168396
RCV003064370
RCV003051329
RCV003051001
RCV003066892
RCV003087650
RCV003079207
RCV003072414
RCV000630944
RCV002611407
RCV002615091
RCV002628881
RCV002647205
RCV002663942
RCV003108462
RCV003118014
RCV002575909
RCV002575617
RCV002583539
RCV002584081
RCV002635377
RCV002659024
RCV002695848
RCV002755902
RCV002736642
RCV002730606
RCV002736130
RCV002760340
RCV002745908
RCV002740878
RCV002805380
RCV002810495
RCV000804476
RCV001043860
RCV002801814
RCV002834105
RCV002838402
RCV002867020
RCV002857202
RCV002871728
RCV002894095
RCV002872067
RCV002881341
RCV002865974
RCV002847393
RCV002881922
RCV002886037
RCV002895821
RCV002890069
RCV002903261
RCV002932892
RCV002966933
RCV002975486
RCV000199923
RCV003018242
RCV003033612
RCV002996815
RCV003012207
RCV003017434
RCV003034715
RCV003034449
RCV003043416
RCV003047487
RCV003057189
RCV003048691
RCV000204633
RCV000206698
RCV000205897
RCV000204795
RCV003635998
RCV003123367
RCV003155659
RCV000230300
RCV000231136
RCV000228729
RCV000233245
RCV003765581
RCV003523170
RCV003523182
RCV005100157
RCV003636021
RCV005100158
RCV003779025
RCV005616642
RCV003523183
RCV003523359
RCV003523948
RCV003523271
RCV003523360
RCV003522219
RCV003522549
RCV003525286
RCV003525343
RCV003523766
RCV003523634
RCV003523795
RCV003523669
RCV003523732
RCV003524419
RCV003524645
RCV003524765
RCV003524842
RCV003522702
RCV003522870
RCV003522882
RCV003522680
RCV003522754
RCV003522797
RCV003636112
RCV003636101
RCV003636247
RCV003637136
RCV003637132
RCV003637031
RCV003637148
RCV003637336
RCV003637338
RCV003637302
RCV003637304
RCV003637375
RCV003637641
RCV003637732
RCV003637736
RCV003637784
RCV003638016
RCV003638040
RCV003635462
RCV003635501
RCV003635432
RCV003635530
RCV003635531
RCV003635710
RCV003635753
RCV003635812
RCV003636492
RCV003636747
RCV003637569
RCV003822260
RCV003832664
RCV003837647
RCV003829590
RCV003839810
RCV003858534
RCV003842994
RCV003846852
RCV003859725
RCV003861759
RCV003878196
RCV003876477
RCV004018184
RCV004018234
RCV005090646
RCV001223227
RCV001865263
RCV001245476
RCV004701475
RCV000475930
RCV000466964
RCV000464366
RCV000465485
RCV000470001
RCV000471236
RCV000474895
RCV001223396
RCV001219227
RCV001851411
RCV001380594
RCV001857096
RCV001383377
RCV000701341
RCV000685268
RCV000536967
RCV000527193
RCV000546890
RCV000540300
RCV000543183
RCV000555905
RCV000529668
RCV000556612
RCV000525327
RCV001231124
RCV000630899
RCV000630873
RCV000630824
RCV000630961
RCV001855345
RCV000801328
RCV001218261
RCV001383939
RCV001229363
RCV001222479
RCV003767972
RCV002532156
RCV001855583
RCV001071414
RCV001246767
RCV001855502
RCV000796523
RCV001382564
RCV000688900
RCV001855546
RCV001383586
RCV001245500
RCV002530721
RCV001861781
RCV003768006
RCV001384022
RCV001240902
RCV001384720
RCV001058321
RCV001861792
RCV000822096
RCV001868239
RCV001242661
RCV001069523
RCV001584542
RCV002532125
RCV003523013
RCV001378203
RCV001868249
RCV005091943
RCV000812393
RCV003523011
RCV001204945
RCV002530683
RCV001379949
RCV001377209
RCV000699054
RCV005240441
RCV001387726
RCV001855596
RCV002531365
RCV001855559
RCV002531235
RCV001382479
RCV005091964
RCV000817200
RCV001065334
RCV001235351
RCV002531281
RCV000798970
RCV002255501
RCV001379453
RCV000806911
RCV001211107
RCV001387348
RCV001861771
RCV000809264
RCV000803258
RCV001047569
RCV001210504
RCV001055356
RCV001868230
RCV001054905
RCV001868216
RCV000805493
RCV000799363
RCV001203018
RCV000813603
RCV001861842
RCV001037066
RCV001855434
RCV001387347
RCV000706464
RCV000695127
RCV000693701
RCV000703200
RCV001868923
RCV001043409
RCV001386218
RCV000779593
RCV000811488
RCV000795080
RCV000823169
RCV000802326
RCV000813088
RCV000814027
RCV000823140
RCV000801557
RCV000803831
RCV000803115
RCV000798954
RCV000799851
RCV000809003
RCV000801912
RCV000811635
RCV000821969
RCV000798008
RCV001241985
RCV001858712
RCV001381596
RCV001064494
RCV001041985
RCV001045029
RCV001058235
RCV001066000
RCV001040068
RCV001067317
RCV001065034
RCV001071452
RCV001037568
RCV001070425
RCV001063647
RCV001044309
RCV001044967
RCV001066977
RCV001043714
RCV001057513
RCV001052431
RCV001071454
RCV001036272
RCV001057714
RCV001036122
RCV001071425
RCV001051366
RCV001052274
RCV001068973
RCV001053503
RCV003523063
RCV001873582
RCV001224011
RCV001223697
RCV001220629
RCV001222888
RCV001204408
RCV001205456
RCV001205784
RCV001202859
RCV001213212
RCV001215793
RCV001215768
RCV001222540
RCV001227821
RCV001235813
RCV001228384
RCV001234856
RCV001245228
RCV001246892
RCV001237762
RCV001232390
RCV001239097
RCV001241531
RCV001247635
RCV003635951
RCV001844280
RCV003523083
RCV003635954
RCV001390093
RCV001384450
RCV005094188
RCV003635950
RCV002568709
RCV001879790
RCV003523087
RCV002568708
RCV002570433
RCV001879789
RCV002570432
RCV005432634
RCV004587093
RCV001879795
RCV001879794
RCV002570437
RCV001377117
RCV001389973
RCV001879801
RCV002570438
RCV001389974
RCV002570436
RCV001879788
RCV001879787
RCV001879800
RCV003523088
RCV001879792
RCV002570435
RCV002570431
RCV003399023
RCV003485697
RCV003635949
RCV003523086
RCV001879798
RCV001879791
RCV003635948
RCV004769973
RCV001879797
RCV003635953
RCV003523089
RCV002568710
RCV003523084
RCV001806088
RCV001879786
RCV003523082
RCV001879785
RCV003635952
RCV001879796
RCV003635956
RCV005614507
RCV001880068
RCV001880078
RCV003635958
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Likely benign rs17226082, rs11646910, rs1131660, rs17233141, rs17225943 RCV005917124
RCV005922007
RCV005889495
RCV005889509
RCV005889518
Adrenocortical carcinoma, hereditary Benign; Likely benign rs11646374, rs1131660 RCV005889485
RCV005889498
Cervical cancer Benign; Likely benign rs1131660 RCV005889499
Cholangiocarcinoma Benign; Likely benign rs17226973, rs17226082, rs1131660 RCV005919596
RCV005917126
RCV005889506
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Mucinous Associate 34103667
Adenocarcinoma of Lung Associate 31514295, 39375712
Adenomatous Polyposis Coli Associate 39519399
Alopecia Neurologic Defects and Endocrinopathy Syndrome Associate 31461451
Anemia Associate 28215707
Anemia Hemolytic Associate 11091222, 11167740, 15860134, 16445838, 27121516, 32866285, 35954197, 36894310, 8896563
Azoospermia Associate 35366911
Bone Marrow Failure Disorders Associate 11739169, 15860134, 16946016, 32054657, 37450374
Brain Neoplasms Associate 26849056
Breast Neoplasms Associate 10098735, 23021409, 26201965, 28440412, 30947698, 33762291, 35293552