Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2153
Gene name Gene Name - the full gene name approved by the HGNC.
Coagulation factor V
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
F5
Synonyms (NCBI Gene) Gene synonyms aliases
FVL, PCCF, RPRGL1, THPH2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
RPRGL1, THPH2
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q24.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an essential cofactor of the blood coagulation cascade. This factor circulates in plasma, and is converted to the active form by the release of the activation peptide by thrombin during coagulation. This generates a heavy chain and a lig
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs6007 T>C,G Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs6011 G>C Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs6025 C>A,T Benign, pathogenic, conflicting-interpretations-of-pathogenicity, drug-response, risk-factor Coding sequence variant, missense variant
rs6034 G>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs118203905 T>C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT020806 hsa-miR-155-5p Proteomics 18668040
MIRT441857 hsa-miR-323a-3p PAR-CLIP 22100165
MIRT441856 hsa-miR-634 PAR-CLIP 22100165
MIRT441855 hsa-miR-5585-5p PAR-CLIP 22100165
MIRT441857 hsa-miR-323a-3p PAR-CLIP 22100165
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0002576 Process Platelet degranulation TAS
GO:0005507 Function Copper ion binding IEA
GO:0005515 Function Protein binding IPI 2844223, 6323392, 9556620
GO:0005576 Component Extracellular region NAS 14718574
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
612309 3542 ENSG00000198734
Protein
UniProt ID P12259
Protein name Coagulation factor V (Activated protein C cofactor) (Proaccelerin, labile factor) [Cleaved into: Coagulation factor V heavy chain; Coagulation factor V light chain]
Protein function Central regulator of hemostasis. It serves as a critical cofactor for the prothrombinase activity of factor Xa that results in the activation of prothrombin to thrombin.
PDB 1CZS , 1CZT , 1CZV , 3P6Z , 3P70 , 3S9C , 7KVE , 7KVF , 7KXY , 7TPP , 8FDG , 8TN9 , 9CTH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07732 Cu-oxidase_3 65 197 Multicopper oxidase Domain
PF06049 LSPR 1077 1085 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1185 1193 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1194 1202 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1203 1211 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1230 1238 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1239 1247 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1257 1265 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1275 1283 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1293 1301 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1302 1310 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1320 1328 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1338 1346 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1356 1364 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1374 1382 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1383 1391 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1410 1418 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1428 1436 Coagulation Factor V LSPD Repeat Repeat
PF06049 LSPR 1437 1445 Coagulation Factor V LSPD Repeat Repeat
PF07732 Cu-oxidase_3 1641 1753 Multicopper oxidase Domain
PF00754 F5_F8_type_C 1922 2058 F5/8 type C domain Domain
PF00754 F5_F8_type_C 2081 2218 F5/8 type C domain Domain
Tissue specificity TISSUE SPECIFICITY: Plasma.
Sequence
MFPGCPRLWVLVVLGTSWVGWGSQGTEAAQLRQFYVAAQGISWSYRPEPTNSSLNLSVTS
FKKIVYREYEPYFKKEKPQSTISGLLGPTLYAEVGDIIKVHFKNKADKPLSIHPQGIRYS
KLSEGASYLDHTFPAEKMDDAVAPGREYTYEWSISEDSGPTHDDPPCLTHIYYSHENLIE
DFNSGLIGPLLICKKGT
LTEGGTQKTFDKQIVLLFAVFDESKSWSQSSSLMYTVNGYVNG
TMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLEQNHHKVSAITLVSATSTTANMTV
GPEGKWIISSLTPKHLQAGMQAYIDIKNCPKKTRNLKKITREQRRHMKRWEYFIAAEEVI
WDYAPVIPANMDKKYRSQHLDNFSNQIGKHYKKVMYTQYEDESFTKHTVNPNMKEDGILG
PIIRAQVRDTLKIVFKNMASRPYSIYPHGVTFSPYEDEVNSSFTSGRNNTMIRAVQPGET
YTYKWNILEFDEPTENDAQCLTRPYYSDVDIMRDIASGLIGLLLICKSRSLDRRGIQRAA
DIEQQAVFAVFDENKSWYLEDNINKFCENPDEVKRDDPKFYESNIMSTINGYVPESITTL
GFCFDDTVQWHFCSVGTQNEILTIHFTGHSFIYGKRHEDTLTLFPMRGESVTVTMDNVGT
WMLTSMNSSPRSKKLRLKFRDVKCIPDDDEDSYEIFEPPESTVMATRKMHDRLEPEDEES
DADYDYQNRLAAALGIRSFRNSSLNQEEEEFNLTALALENGTEFVSSNTDIIVGSNYSSP
SNISKFTVNNLAEPQKAPSHQQATTAGSPLRHLIGKNSVLNSSTAEHSSPYSEDPIEDPL
QPDVTGIRLLSLGAGEFKSQEHAKHKGPKVERDQAAKHRFSWMKLLAHKVGRHLSQDTGS
PSGMRPWEDLPSQDTGSPSRMRPWKDPPSDLLLLKQSNSSKILVGRWHLASEKGSYEIIQ
DTDEDTAVNNWLISPQNASRAWGESTPLANKPGKQSGHPKFPRVRHKSLQVRQDGGKSRL
KKSQFLIKTRKKKKEKHTHHAPLSPRTFHPLRSEAYNTFSERRLKHSLVLHKSNETSLPT
DLNQT
LPSMDFGWIASLPDHNQNSSNDTGQASCPPGLYQTVPPEEHYQTFPIQDPDQMHS
TSDPSHRSSSPELSEMLEYDRSHKSFPTDISQMSPSSEHEVWQTVISPDLSQVTLSPELS
QT
NLSPDLSHTTLSPELIQRNLSPALGQMPISPDLSHTTLSPDLSHTTLSLDLSQTNLSP
ELSQT
NLSPALGQMPLSPDLSHTTLSLDFSQTNLSPELSHMTLSPELSQTNLSPALGQMP
ISPDLSHT
TLSLDFSQTNLSPELSQTNLSPALGQMPLSPDPSHTTLSLDLSQTNLSPELS
QT
NLSPDLSEMPLFADLSQIPLTPDLDQMTLSPDLGETDLSPNFGQMSLSPDLSQVTLSP
DISDT
TLLPDLSQISPPPDLDQIFYPSESSQSLLLQEFNESFPYPDLGQMPSPSSPTLND
TFLSKEFNPLVIVGLSKDGTDYIEIIPKEEVQSSEDDYAEIDYVPYDDPYKTDVRTNINS
SRDPDNIAAWYLRSNNGNRRNYYIAAEEISWDYSEFVQRETDIEDSDDIPEDTTYKKVVF
RKYLDSTFTKRDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKS
SEGKTYEDDSPEWFKEDNAVQPNSSYTYVWHATERSGPESPGSACRAWAYYSAVNPEKDI
HSGLIGPLLICQK
GILHKDSNMPMDMREFVLLFMTFDEKKSWYYEKKSRSSWRLTSSEMK
KSHEFHAINGMIYSLPGLKMYEQEWVRLHLLNIGGSQDIHVVHFHGQTLLENGNKQHQLG
VWPLLPGSFKTLEMKASKPGWWLLNTEVGENQRAGMQTPFLIMDRDCRMPMGLSTGIISD
SQIKASEFLGYWEPRLARLNNGGSYNAWSVEKLAAEFASKPWIQVDMQKEVIITGIQTQG
AKHYLKSCYTTEFYVAYSSNQINWQIFKGNSTRNVMYFNGNSDASTIKENQFDPPIVARY
IRISPTRAYNRPTLRLEL
QGCEVNGCSTPLGMENGKIENKQITASSFKKSWWGDYWEPFR
ARLNAQGRVNAWQAKANNNKQWLEIDLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQ
GVEWKPYRLKSSMVDKIFEGNTNTKGHVKNFFNPPIISRFIRVIPKTWNQSIALRLEL
FG
CDIY
Sequence length 2224
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Complement and coagulation cascades   Platelet degranulation
Common Pathway of Fibrin Clot Formation
COPII-mediated vesicle transport
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Cargo concentration in the ER
Post-translational protein phosphorylation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Activated protein c resistance Activated Protein C Resistance, THROMBOPHILIA DUE TO ACTIVATED PROTEIN C RESISTANCE (disorder) rs118203912, rs118203911, rs1571577365 23188048, 26649017, 10666427, 7673148, 23900608, 11110695, 29179580, 3286010, 24523236, 16268462, 9616155, 21116184, 10391209, 28889200, 11858490
View all (12 more)
Bleeding disorder Bleeding Disorder, East Texas Type, East Texas bleeding disorder rs121918444, rs398122372, rs398122373, rs773148506, rs1064797083, rs1064797085, rs1064797087, rs761749948 23979162
Colonic neoplasms Malignant tumor of colon, Colonic Neoplasms rs267607789, rs774277300, rs781222233, rs1060502734, rs1060503333, rs1339238483 25200834
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Unknown
Disease term Disease name Evidence References Source
Budd-chiari syndrome Budd-Chiari Syndrome, Budd-Chiari syndrome 24755609, 26238013 ClinVar
Cerebral infarction Cerebral Infarction ClinVar
Cirrhosis Cirrhosis ClinVar
Ischemic stroke Ischemic stroke 26908601 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 17454173
Abortion Habitual Associate 12447960, 16194196, 16753154, 23683262, 24484533, 26060483, 27090446, 28819944, 36526982, 9207398
Abortion Habitual Stimulate 36554381
Abortion Spontaneous Stimulate 11821094, 36554381
Abortion Spontaneous Associate 12447960, 15618258, 16138341, 16194196, 17439630, 20002540, 23256575, 25153695, 34360543, 38057822
Abruptio Placentae Stimulate 21985600
Abruptio Placentae Associate 24645228
Activated Protein C Resistance Associate 10233368, 10726047, 10928623, 10936863, 10980068, 15257712, 18702875, 20002000, 21564075, 36695379, 7780138, 7989612, 8049422, 8573079, 9183305
View all (3 more)
Acute Coronary Syndrome Associate 27581673
Adenocarcinoma Associate 22247499