Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2138
Gene name Gene Name - the full gene name approved by the HGNC.
EYA transcriptional coactivator and phosphatase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
EYA1
Synonyms (NCBI Gene) Gene synonyms aliases
BOP, BOR, BOS1, OFC1, OTFCS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BOS1
Chromosome Chromosome number
8
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8q13.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the eyes absent (EYA) family of proteins. The encoded protein may play a role in the developing kidney, branchial arches, eye, and ear. Mutations of this gene have been associated with branchiootorenal dysplasia syndrome, bra
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121909195 G>A,C Pathogenic Missense variant, stop gained, coding sequence variant
rs121909196 C>T Pathogenic Missense variant, coding sequence variant
rs121909197 T>C Pathogenic Missense variant, coding sequence variant
rs121909198 C>T Pathogenic Intron variant, coding sequence variant, missense variant
rs121909199 C>T Likely-benign, uncertain-significance, benign, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000035 hsa-miR-562 Luciferase reporter assay 19789318
MIRT973690 hsa-miR-101 CLIP-seq
MIRT973691 hsa-miR-1243 CLIP-seq
MIRT973692 hsa-miR-128 CLIP-seq
MIRT973693 hsa-miR-2278 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004725 Function Protein tyrosine phosphatase activity IBA 21873635
GO:0004725 Function Protein tyrosine phosphatase activity IDA 19234442
GO:0005515 Function Protein binding IPI 15141091, 28514442, 32296183
GO:0005634 Component Nucleus IBA 21873635
GO:0005634 Component Nucleus IDA 19234442, 19497856
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601653 3519 ENSG00000104313
Protein
UniProt ID Q99502
Protein name Protein phosphatase EYA1 (EC 3.1.3.16) (EC 3.1.3.48) (Eyes absent homolog 1)
Protein function Functions both as protein phosphatase and as transcriptional coactivator for SIX1, and probably also for SIX2, SIX4 and SIX5 (By similarity). Tyrosine phosphatase that dephosphorylates 'Tyr-142' of histone H2AX (H2AXY142ph) and promotes efficien
Family and domains
Tissue specificity TISSUE SPECIFICITY: In the embryo, highly expressed in kidney with lower levels in brain. Weakly expressed in lung. In the adult, highly expressed in heart and skeletal muscle. Weakly expressed in brain and liver. No expression in eye or kidney.
Sequence
MEMQDLTSPHSRLSGSSESPSGPKLGNSHINSNSMTPNGTEVKTEPMSSSETASTTADGS
LNNFSGSAIGSSSFSPRPTHQFSPPQIYPSNRPYPHILPTPSSQTMAAYGQTQFTTGMQQ
ATAYATYPQPGQPYGISSYGALWAGIKTEGGLSQSQSPGQTGFLSYGTSFSTPQPGQAPY
SYQMQGSSFTTSSGIYTGNNSLTNSSGFNSSQQDYPSYPSFGQGQYAQYYNSSPYPAHYM
TSSNTSPTTPSTNATYQLQEPPSGITSQAVTDPTAEYSTIHSPSTPIKDSDSDRLRRGSD
GKSRGRGRRNNNPSPPPDSDLERVFIWDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGL
RMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCL
ATGVRGGVDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLT
LALKALSLIHSRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFER
IIQRFGRKVVYVVIGDGVEEEQGAKKHAMPFWRISSHSDLMALHHALELEYL
Sequence length 592
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Transcriptional misregulation in cancer   Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anterior segment anomalies ANTERIOR SEGMENT ANOMALIES WITH OR WITHOUT CATARACT rs121909197 23840632, 9359046
Branchiooculofacial syndrome Branchio-Oculo-Facial Syndrome rs121909196, rs121909574, rs121909575, rs267607108, rs151344525, rs793888540, rs793888541, rs151344530, rs1554110735, rs1554110673, rs1554110994, rs151344531, rs151344528, rs1554111717, rs1554111734
View all (5 more)
12834866
Branchiootic syndrome BRANCHIOOTIC SYNDROME 1, Branchiootic syndrome rs121909196, rs121909202, rs606231356, rs104894478, rs80356459, rs80356460, rs121909770, rs863223330, rs797044960, rs1064794308, rs1131691667, rs1563630117, rs397517917, rs1816289467 9603436, 10655545, 9359046, 12701758, 16691597, 23840632
Branchiootorenal syndrome Branchio-Oto-Renal Syndrome, Branchiootorenal Syndrome 2 rs80356463 14628042, 10072433, 19206155, 18220287, 12834866, 19951260, 11734542
Unknown
Disease term Disease name Evidence References Source
Cholesteatoma Cholesteatoma ClinVar
Renal dysplasia Renal Cell Dysplasia, Renal dysplasia ClinVar
Endometriosis Endometriosis GWAS
Hypospadias Hypospadias GWAS
Associations from Text Mining
Disease Name Relationship Type References
Branchio Oto Renal Syndrome Associate 15141091, 16813606, 17357085, 19215039, 20979191, 21280147, 23506628, 23840632, 30086703, 30221713, 33880118, 34160378, 35046468, 35545373, 35698919
View all (7 more)
Branchiootic syndrome Associate 16813606, 30221713
Breast Neoplasms Associate 27795300
Buschke Ollendorff syndrome Associate 33880118
Cakut Associate 24429398, 27657687, 37499630
Carcinoma Hepatocellular Associate 31731191
Carcinoma Renal Cell Associate 37156847
Cochlear Diseases Associate 36833263
Deafness Associate 30221713, 31992338, 35248088
Delayed Cranial Ossification due to CBFB Haploinsufficiency Associate 15141091