Gene Gene information from NCBI Gene database.
Entrez ID 2138
Gene name EYA transcriptional coactivator and phosphatase 1
Gene symbol EYA1
Synonyms (NCBI Gene)
BOPBORBOS1OFC1OTFCS
Chromosome 8
Chromosome location 8q13.3
Summary This gene encodes a member of the eyes absent (EYA) family of proteins. The encoded protein may play a role in the developing kidney, branchial arches, eye, and ear. Mutations of this gene have been associated with branchiootorenal dysplasia syndrome, bra
SNPs SNP information provided by dbSNP.
50
SNP ID Visualize variation Clinical significance Consequence
rs121909195 G>A,C Pathogenic Missense variant, stop gained, coding sequence variant
rs121909196 C>T Pathogenic Missense variant, coding sequence variant
rs121909197 T>C Pathogenic Missense variant, coding sequence variant
rs121909198 C>T Pathogenic Intron variant, coding sequence variant, missense variant
rs121909199 C>T Likely-benign, uncertain-significance, benign, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
66
miRTarBase ID miRNA Experiments Reference
MIRT000035 hsa-miR-562 Luciferase reporter assay 19789318
MIRT973690 hsa-miR-101 CLIP-seq
MIRT973691 hsa-miR-1243 CLIP-seq
MIRT973692 hsa-miR-128 CLIP-seq
MIRT973693 hsa-miR-2278 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
61
GO ID Ontology Definition Evidence Reference
GO:0001656 Process Metanephros development IEA
GO:0001657 Process Ureteric bud development IEA
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0003151 Process Outflow tract morphogenesis IEA
GO:0003723 Function RNA binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601653 3519 ENSG00000104313
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q99502
Protein name Protein phosphatase EYA1 (EC 3.1.3.16) (EC 3.1.3.48) (Eyes absent homolog 1)
Protein function Functions both as protein phosphatase and as transcriptional coactivator for SIX1, and probably also for SIX2, SIX4 and SIX5 (By similarity). Tyrosine phosphatase that dephosphorylates 'Tyr-142' of histone H2AX (H2AXY142ph) and promotes efficien
Family and domains
Tissue specificity TISSUE SPECIFICITY: In the embryo, highly expressed in kidney with lower levels in brain. Weakly expressed in lung. In the adult, highly expressed in heart and skeletal muscle. Weakly expressed in brain and liver. No expression in eye or kidney.
Sequence
MEMQDLTSPHSRLSGSSESPSGPKLGNSHINSNSMTPNGTEVKTEPMSSSETASTTADGS
LNNFSGSAIGSSSFSPRPTHQFSPPQIYPSNRPYPHILPTPSSQTMAAYGQTQFTTGMQQ
ATAYATYPQPGQPYGISSYGALWAGIKTEGGLSQSQSPGQTGFLSYGTSFSTPQPGQAPY
SYQMQGSSFTTSSGIYTGNNSLTNSSGFNSSQQDYPSYPSFGQGQYAQYYNSSPYPAHYM
TSSNTSPTTPSTNATYQLQEPPSGITSQAVTDPTAEYSTIHSPSTPIKDSDSDRLRRGSD
GKSRGRGRRNNNPSPPPDSDLERVFIWDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGL
RMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCL
ATGVRGGVDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLT
LALKALSLIHSRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFER
IIQRFGRKVVYVVIGDGVEEEQGAKKHAMPFWRISSHSDLMALHHALELEYL
Sequence length 592
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Transcriptional misregulation in cancer   Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
868
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal anterior chamber morphology Pathogenic rs121909198 RCV000008399
Anhydramnios Pathogenic rs2128850253 RCV001807680
Anterior segment anomalies and cataract Pathogenic rs121909197 RCV000008398
Bilateral renal agenesis Pathogenic rs2128850253 RCV001807680
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs117149407 RCV005890238
Branchiootorenal Spectrum Disorders Uncertain significance; Likely benign; Benign rs886063095, rs35320129, rs886063099, rs886063085, rs570995924, rs371488223, rs886063096, rs886063100, rs553875263, rs146202037, rs142792208, rs574723016, rs112480709 RCV000326952
RCV000401334
RCV000337642
RCV000393653
RCV000355286
RCV000272473
RCV000292091
RCV000402343
RCV000392551
RCV000300595
RCV000338465
RCV000262420
RCV000348756
RCV000308373
Branchiootorenal syndrome with cataract Conflicting classifications of pathogenicity rs121909199 RCV000008400
Clear cell carcinoma of kidney Benign rs117149407 RCV005890241
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Branchio Oto Renal Syndrome Associate 15141091, 16813606, 17357085, 19215039, 20979191, 21280147, 23506628, 23840632, 30086703, 30221713, 33880118, 34160378, 35046468, 35545373, 35698919
View all (7 more)
Branchiootic syndrome Associate 16813606, 30221713
Breast Neoplasms Associate 27795300
Buschke Ollendorff syndrome Associate 33880118
Cakut Associate 24429398, 27657687, 37499630
Carcinoma Hepatocellular Associate 31731191
Carcinoma Renal Cell Associate 37156847
Cochlear Diseases Associate 36833263
Deafness Associate 30221713, 31992338, 35248088
Delayed Cranial Ossification due to CBFB Haploinsufficiency Associate 15141091