Gene Gene information from NCBI Gene database.
Entrez ID 2121
Gene name EvC ciliary complex subunit 1
Gene symbol EVC
Synonyms (NCBI Gene)
DWF-1EVC1EVCL
Chromosome 4
Chromosome location 4p16.2
Summary This gene encodes a protein containing a leucine zipper and a transmembrane domain. This gene has been implicated in both Ellis-van Creveld syndrome (EvC) and Weyers acrodental dysostosis. [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
79
SNP ID Visualize variation Clinical significance Consequence
rs35401386 G>A,C,T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic downstream transcript variant, non coding transcript variant
rs41269547 A>G Benign-likely-benign, likely-benign, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant
rs41269549 G>A Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant
rs41269557 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic downstream transcript variant, non coding transcript variant
rs121908424 C>T Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
211
miRTarBase ID miRNA Experiments Reference
MIRT018424 hsa-miR-335-5p Microarray 18185580
MIRT042772 hsa-miR-339-5p CLASH 23622248
MIRT037807 hsa-miR-455-3p CLASH 23622248
MIRT691894 hsa-miR-2278 HITS-CLIP 23313552
MIRT691893 hsa-miR-4768-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development TAS 10700184
GO:0003416 Process Endochondral bone growth IEA
GO:0003416 Process Endochondral bone growth ISS
GO:0005737 Component Cytoplasm IEA
GO:0005856 Component Cytoskeleton IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604831 3497 ENSG00000072840
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P57679
Protein name EvC complex member EVC (DWF-1) (Ellis-van Creveld syndrome protein)
Protein function Component of the EvC complex that positively regulates ciliary Hedgehog (Hh) signaling. Involved in endochondral growth and skeletal development.
Family and domains
Tissue specificity TISSUE SPECIFICITY: Found in the developing vertebral bodies, ribs, upper and lower limbs, heart, kidney, lung.
Sequence
MARGGAACKSDARLLLGRDALRPAPALLAPAVLLGAALGLGLGLWLGCRAGRQRTRHQKD
DTQNLLKNLESNAQTPSETGSPSRRRKREVQMSKDKEAVDECEPPSNSNITAFALKAKVI
YPINQKFRPLADGSSNPSLHENLKQAVLPHQPVEASPSSSLGSLSQGEKDDCSSSSSVHS
ATSDDRFLSRTFLRVNAFPEVLACESVDVDLCIYSLHLKDLLHLDTALRQEKHMMFIQIF
KMCLLDLLPKKKSDDELYQKILSKQEKDLEELEKGLQVKLSNTEMSGAGDSEYITLADVE
KKEREYSEQLIDNMEAFWKQMANIQHFLVDQFKCSSSKARQLMMTLTERMIAAEGLLCDS
QELQALDALERTMGRAHMAKVIEFLKLQVQEETRCRLAAISHGLELLAGEGKLSGRQKEE
LLTQQHKAFWQEAERFSREFVQRGKDLVTASLAHQVEGTAKLTLAQEEEQRSFLAEAQPT
ADPEKFLEAFHEVLERQRLMQCDLEEEENVRATEAVVALCQELYFSTVDTFQKFVDALFL
QTLPGMTGLPPEECDYLRQEVQENAAWQLGKSNRFRRQQWKLFQELLEQDQQVWMEECAL
SSVLQTHLREDHEGTIRGVLGRLGGLTEESTRCVLQGHDLLLRSALRRLALRGNALATLT
QMRLSGKKHLLQELREQRALEQGSSQCLDEHQWQLLRALEARVLEEASRLEEEAQQTRLQ
LQQRLLAEAQEVGQLLQQHMECAIGQALLVHARNAATKSRAKDRDDFKRTLMEAAVESVY
VTSAGVSRLVQAYYQQIGRIMEDHEERKLQHLKTLQGERMENYKLRKKQELSNPSSGSRT
AGGAHETSQAVHQRMLSQQKRFLAQFPVHQQMRLHAQQQQAGVMDLLEAQLETQLQEAEQ
NFISELAALARVPLAESKLLPAKRGLLEKPLRTKRKKPLPQERGDLGVPNNEDLASGDQT
SGSLSSKRLSQQESEAGDSGNSKKMLKRRSNL
Sequence length 992
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Hedgehog signaling pathway   Hedgehog 'on' state
Activation of SMO
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
3095
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Chronic lymphocytic leukemia/small lymphocytic lymphoma Likely pathogenic; Pathogenic rs767186464 RCV005912598
Clear cell carcinoma of kidney Likely pathogenic rs1293098417 RCV005901984
Curry-Hall syndrome Pathogenic; Likely pathogenic rs1722986802, rs1381525157, rs767186464, rs2152387946, rs762136199, rs1553871764, rs1729663828, rs745627738, rs2152076522, rs2152076745, rs2152094799, rs2152289369, rs2152345583, rs561852174, rs2152375437
View all (162 more)
RCV001380195
RCV002611189
RCV001377982
RCV001378553
RCV001382945
RCV001381767
RCV001385786
RCV001385169
RCV001385913
RCV001388340
RCV001385204
RCV001388456
RCV001381686
RCV001387037
RCV001380697
RCV001882699
RCV002034559
RCV002541450
RCV001988728
RCV002031272
RCV002046312
RCV001993000
RCV001899273
RCV001892851
RCV001941809
RCV001917509
RCV001987550
RCV001953852
RCV001898179
RCV001903068
RCV002007284
RCV001864500
RCV002037849
RCV001993171
RCV002000008
RCV002037830
RCV002007593
RCV002002509
RCV001941596
RCV001877849
RCV001951253
RCV001905559
RCV001975003
RCV001956415
RCV001956416
RCV001953649
RCV001972595
RCV001883666
RCV001985091
RCV001956567
RCV001956568
RCV001958682
RCV003099152
RCV003090305
RCV002598826
RCV002651797
RCV002651798
RCV002651800
RCV002717207
RCV002775656
RCV001851677
RCV001045109
RCV000807465
RCV001383029
RCV003764530
RCV002800716
RCV002801841
RCV002838926
RCV002837571
RCV002830096
RCV002875515
RCV002875563
RCV002853246
RCV002876450
RCV002876169
RCV002872361
RCV002954055
RCV003020449
RCV003010421
RCV003018999
RCV003006205
RCV003038851
RCV003029107
RCV003055156
RCV003052019
RCV003032980
RCV003322662
RCV003778311
RCV003785451
RCV003785813
RCV003784600
RCV003782185
RCV003781030
RCV003795604
RCV003792862
RCV003798259
RCV003794406
RCV003791851
RCV003807998
RCV003806451
RCV003806902
RCV003799870
RCV003800130
RCV003805954
RCV003798870
RCV003799137
RCV003799138
RCV003803104
RCV003801042
RCV003801339
RCV003808564
RCV003808879
RCV003809074
RCV003804575
RCV003804596
RCV003802453
RCV003817999
RCV003813527
RCV003815726
RCV003810058
RCV003813280
RCV003813319
RCV003812849
RCV003818126
RCV003810289
RCV002488850
RCV001045278
RCV000526470
RCV003766903
RCV001050511
RCV001389791
RCV001383173
RCV000548054
RCV001382208
RCV001049990
RCV000637036
RCV000695327
RCV002532111
RCV001387632
RCV001235220
RCV000807466
RCV001229451
RCV001038169
RCV002531254
RCV002532061
RCV001213995
RCV001378366
RCV001383028
RCV001047674
RCV003767956
RCV002531324
RCV003767997
RCV001855487
RCV000804230
RCV001202364
RCV003767978
RCV000693001
RCV005213381
RCV001385924
RCV001856175
RCV003768448
RCV000800109
RCV000800691
RCV000824617
RCV001052409
RCV001041122
RCV001035927
RCV001054953
RCV001068092
RCV001048504
RCV001389687
RCV001222961
RCV001223333
RCV001204407
RCV001201711
RCV001210514
RCV001211362
RCV001214558
RCV001223287
RCV001223607
RCV001228381
RCV001247905
RCV001243415
RCV001241196
RCV001293691
Ellis-van Creveld syndrome Pathogenic; Likely pathogenic rs1722986802, rs1381525157, rs767186464, rs2152387946, rs762136199, rs1553871764, rs1729663828, rs745627738, rs2152076522, rs2152076745, rs2152094799, rs2152289369, rs2152345583, rs561852174, rs2152375437
View all (226 more)
RCV001312198
RCV002611189
RCV001377982
RCV001378553
RCV001382945
RCV001381767
RCV001385786
RCV001385169
RCV001385913
RCV001388340
RCV001385204
RCV001388456
RCV001381686
RCV001387037
RCV001380697
RCV001580697
RCV001580698
RCV001580699
RCV002034559
RCV001806404
RCV001988728
RCV002031272
RCV002046312
RCV001993000
RCV001899273
RCV001892851
RCV001941809
RCV001917509
RCV001987550
RCV001953852
RCV001898179
RCV001903068
RCV002007284
RCV001864500
RCV002037849
RCV001993171
RCV002000008
RCV002037830
RCV002007593
RCV002002509
RCV001941596
RCV001877849
RCV001951253
RCV001905559
RCV001975003
RCV001956415
RCV001956416
RCV001953649
RCV001972595
RCV001883666
RCV001985091
RCV001956567
RCV001956568
RCV001958682
RCV002306546
RCV002306599
RCV002306654
RCV002306758
RCV002306801
RCV002309548
RCV002309559
RCV002309633
RCV002309922
RCV002309951
RCV002307912
RCV002307946
RCV002308140
RCV002308172
RCV002308185
RCV002309081
RCV002309084
RCV002309138
RCV002309144
RCV002309231
RCV002309273
RCV002309382
RCV002309442
RCV002306859
RCV002306861
RCV002306901
RCV002306916
RCV002307032
RCV002307035
RCV002307157
RCV002307174
RCV002307252
RCV002307254
RCV002307255
RCV002310151
RCV002310158
RCV002310160
RCV002310181
RCV002310222
RCV002310228
RCV002310267
RCV002310287
RCV002310343
RCV002310458
RCV002310560
RCV002308415
RCV003090305
RCV002598826
RCV002651797
RCV002651798
RCV002651800
RCV002717207
RCV002775656
RCV000005666
RCV000005667
RCV000005668
RCV000005669
RCV000005672
RCV000005673
RCV002800716
RCV002801841
RCV002838926
RCV002837571
RCV002830096
RCV002875515
RCV002875563
RCV002853246
RCV002876450
RCV002876169
RCV002872361
RCV002954055
RCV003020449
RCV003010421
RCV003018999
RCV003006205
RCV003038851
RCV003029107
RCV003055156
RCV003052019
RCV003032980
RCV003777326
RCV003778311
RCV003785451
RCV003785813
RCV003784600
RCV003782185
RCV003781030
RCV003795604
RCV003792862
RCV003798259
RCV003794406
RCV003791851
RCV003807998
RCV003806451
RCV003806902
RCV003799870
RCV003800130
RCV003805954
RCV003798870
RCV003799137
RCV003799138
RCV003803104
RCV003801042
RCV003801339
RCV003808564
RCV003808879
RCV003809074
RCV003804575
RCV003804596
RCV003802453
RCV003817999
RCV003813527
RCV003815726
RCV003810058
RCV003813280
RCV003813319
RCV003812849
RCV003818126
RCV003810289
RCV003989943
RCV003990160
RCV000409380
RCV000411885
RCV001828380
RCV000665849
RCV000526470
RCV000516024
RCV000674284
RCV000527392
RCV001383173
RCV000548054
RCV000534638
RCV000578283
RCV000625587
RCV000625588
RCV000637036
RCV000666115
RCV000668921
RCV000674924
RCV000674181
RCV000666798
RCV000669809
RCV000671758
RCV000673841
RCV000664817
RCV000671655
RCV000666935
RCV000670126
RCV000671523
RCV000670543
RCV000667205
RCV000666044
RCV000672556
RCV000674216
RCV000674011
RCV000672688
RCV000673304
RCV000672495
RCV000668673
RCV000667482
RCV000672868
RCV000672542
RCV000669260
RCV000667721
RCV000673971
RCV000666228
RCV000665782
RCV000665984
RCV000669817
RCV000693001
RCV005213381
RCV000761603
RCV001856175
RCV003768448
RCV000790404
RCV000800109
RCV000800691
RCV000824617
RCV000991073
RCV000991074
RCV001052409
RCV001041122
RCV001035927
RCV001054953
RCV001068092
RCV001048504
RCV001175203
RCV001175204
RCV001222961
RCV001223333
RCV001204407
RCV001201711
RCV001210514
RCV001211362
RCV001214558
RCV001223287
RCV001223607
RCV001228381
RCV001247905
RCV001243415
RCV001241196
RCV005225361
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign rs6854138, rs9637548 RCV005894317
RCV005902264
Cholangiocarcinoma Benign rs6854138 RCV005894324
Gastric cancer Benign rs6854138, rs9637548 RCV005894320
RCV005902265
Lung cancer Benign rs6854138, rs9637548 RCV005894325
RCV005902266
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Ciliopathies Associate 33875766
Cleft Lip Associate 20087401
Cleft Palate Associate 20087401
Congenital Microtia Associate 24983964
Diabetes Mellitus Type 2 Associate 29273463
Dyslexia Associate 36514817
Dyslexia Acquired Associate 36514817
Ellis Van Creveld Syndrome Associate 17392984, 18947413, 20184732, 25908617, 29229899, 31338997, 36932784, 37157924, 37684519, 38531627
Heart Diseases Associate 17392984
Heart Septal Defects Atrial Associate 29229899