Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2068
Gene name Gene Name - the full gene name approved by the HGNC.
ERCC excision repair 2, TFIIH core complex helicase subunit
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ERCC2
Synonyms (NCBI Gene) Gene synonyms aliases
COFS2, CXPD, EM9, TFIIH, TTD, TTD1, XPD
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.32
Summary Summary of gene provided in NCBI Entrez Gene.
The nucleotide excision repair pathway is a mechanism to repair damage to DNA. The protein encoded by this gene is involved in transcription-coupled nucleotide excision repair and is an integral member of the basal transcription factor BTF2/TFIIH complex.
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1799792 G>A Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs41556519 G>A Pathogenic, likely-pathogenic Coding sequence variant, genic downstream transcript variant, non coding transcript variant, missense variant
rs121913016 G>C Conflicting-interpretations-of-pathogenicity, not-provided, pathogenic, uncertain-significance Coding sequence variant, genic downstream transcript variant, non coding transcript variant, missense variant
rs121913017 G>A,C Pathogenic Coding sequence variant, missense variant, stop gained, non coding transcript variant, genic downstream transcript variant
rs121913018 C>G Pathogenic Coding sequence variant, genic downstream transcript variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT050977 hsa-miR-17-5p CLASH 23622248
MIRT036466 hsa-miR-1226-3p CLASH 23622248
MIRT968362 hsa-miR-1226 CLIP-seq
MIRT968363 hsa-miR-1292 CLIP-seq
MIRT968364 hsa-miR-29a CLIP-seq
Transcription factors
Transcription factor Regulation Reference
HIF1A Unknown 19934262
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000439 Component Transcription factor TFIIH core complex IDA 8692841, 8692842
GO:0000439 Component Transcription factor TFIIH core complex IEA
GO:0000462 Process Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
GO:0001666 Process Response to hypoxia IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
126340 3434 ENSG00000104884
Protein
UniProt ID P18074
Protein name General transcription and DNA repair factor IIH helicase subunit XPD (TFIIH subunit XPD) (EC 5.6.2.3) (Basic transcription factor 2 80 kDa subunit) (BTF2 p80) (CXPD) (DNA 5'-3' helicase XPD) (DNA excision repair protein ERCC-2) (DNA repair protein complem
Protein function ATP-dependent 5'-3' DNA helicase (PubMed:31253769, PubMed:8413672, PubMed:9771713). Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, not absolutely essential for minimal transcription in vitro (PubMed:100248
PDB 5IVW , 5IY6 , 5IY7 , 5IY8 , 5IY9 , 5OF4 , 6NMI , 6O9L , 6O9M , 6RO4 , 6TUN , 7AD8 , 7EGB , 7EGC , 7ENA , 7ENC , 7LBM , 7NVR , 7NVW , 7NVX , 7NVY , 7NVZ , 7NW0 , 8BVW , 8BYQ , 8EBS , 8EBT , 8EBU , 8EBV , 8EBW , 8EBX , 8EBY , 8GXQ , 8GXS , 8WAK , 8WAL , 8WAN , 8WAO , 8WAP , 8WAQ , 8WAR , 8WAS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06733 DEAD_2 72 256 DEAD_2 Family
PF06777 HBB 269 413 Helical and beta-bridge domain Domain
PF13307 Helicase_C_2 524 700 Helicase C-terminal domain Domain
Sequence
Sequence length 760
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Basal transcription factors
Nucleotide excision repair
  Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Cerebrooculofacioskeletal Syndrome cerebrooculofacioskeletal syndrome 2 rs762309206, rs121913021, rs41556519, rs199658345, rs746795177, rs201127596, rs1233791234, rs121913024, rs121913018, rs587778271, rs774768228, rs151235136, rs376556895, rs1555775416, rs377532898
View all (6 more)
N/A
Leukodystrophy leukodystrophy rs587778271 N/A
ovarian cancer Ovarian cancer rs121913021 N/A
Trichothiodystrophy Trichothiodystrophy 1, photosensitive, trichothiodystrophy rs121913018, rs769146546, rs121913026, rs144564120, rs121913020, rs762309206, rs121913021 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Alzheimer disease Alzheimer's disease or gastroesophageal reflux disease N/A N/A GWAS
Hepatoblastoma hepatoblastoma N/A N/A ClinVar
neoplasm Neoplasm N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 17705814, 18349297, 18478337, 22479369, 26001533, 37006075
Adenocarcinoma of Lung Associate 20003391, 23700156, 33827099
Adenoma Associate 16542436
Adenomatous Polyposis Coli Associate 39519399
Alzheimer Disease Associate 33630843
Anemia Associate 25881102, 34967559
Anxiety Associate 34284736
Arsenic Poisoning Associate 31864032
Bone Diseases Associate 23232694
Bone Diseases Metabolic Associate 36103153