Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2050
Gene name Gene Name - the full gene name approved by the HGNC.
EPH receptor B4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
EPHB4
Synonyms (NCBI Gene) Gene synonyms aliases
CMAVM2, HFASD, HTK, LMPHM7, MYK1, TYRO11
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CMAVM2, LMPHM7
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q22.1
Summary Summary of gene provided in NCBI Entrez Gene.
Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs377702127 G>A,C Likely-pathogenic, pathogenic Synonymous variant, coding sequence variant, stop gained
rs764827256 G>A,C Likely-pathogenic Coding sequence variant, missense variant
rs769965440 G>A Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs776410552 T>C Likely-pathogenic Coding sequence variant, missense variant
rs927772349 C>A,T Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006338 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT006338 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT006338 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT017978 hsa-miR-335-5p Microarray 18185580
MIRT038783 hsa-miR-93-3p CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001525 Process Angiogenesis ISS
GO:0002042 Process Cell migration involved in sprouting angiogenesis IDA 12734395
GO:0003007 Process Heart morphogenesis ISS
GO:0004714 Function Transmembrane receptor protein tyrosine kinase activity IBA 21873635
GO:0004714 Function Transmembrane receptor protein tyrosine kinase activity IDA 8188704
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600011 3395 ENSG00000196411
Protein
UniProt ID P54760
Protein name Ephrin type-B receptor 4 (EC 2.7.10.1) (Hepatoma transmembrane kinase) (Tyrosine-protein kinase TYRO11)
Protein function Receptor tyrosine kinase which binds promiscuously transmembrane ephrin-B family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is
PDB 2BBA , 2E7H , 2HLE , 2QKQ , 2VWU , 2VWV , 2VWW , 2VWX , 2VWY , 2VWZ , 2VX0 , 2VX1 , 2X9F , 2XVD , 2YN8 , 3ZEW , 4AW5 , 4BB4 , 6FNI , 6FNJ , 6FNK , 6FNL , 6FNM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01404 Ephrin_lbd 18 197 Ephrin receptor ligand binding domain Domain
PF07699 Ephrin_rec_like 258 304 Putative ephrin-receptor like Family
PF00041 fn3 325 417 Fibronectin type III domain Domain
PF00041 fn3 435 519 Fibronectin type III domain Domain
PF14575 EphA2_TM 541 612 Ephrin type-A receptor 2 transmembrane domain Domain
PF07714 PK_Tyr_Ser-Thr 615 874 Protein tyrosine and serine/threonine kinase Domain
PF00536 SAM_1 905 969 SAM domain (Sterile alpha motif) Domain
Tissue specificity TISSUE SPECIFICITY: Abundantly expressed in placenta but also detected in kidney, liver, lung, pancreas, skeletal muscle and heart. Expressed in primitive and myeloid, but not lymphoid, hematopoietic cells. Also observed in cell lines derived from liver,
Sequence
MELRVLLCWASLAAALEETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEV
CDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFYYESDA
DTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQD
QGACMALLSLHLFYKKC
AQLTVNLTRFPETVPRELVVPVAGSCVVDAVPAPGPSPSLYCR
EDGQWAEQPVTGCSCAPGFEAAEGNTKCRACAQGTFKPLSGEGSCQPCPANSHSNTIGSA
VCQC
RVGYFRARTDPRGAPCTTPPSAPRSVVSRLNGSSLHLEWSAPLESGGREDLTYALR
CRECRPGGSCAPCGGDLTFDPGPRDLVEPWVVVRGLRPDFTYTFEVTALNGVSSLAT
GPV
PFEPVNVTTDREVPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPS
SVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFG
QEHHSQTQLDESEGWREQLAL
IAGTAVVGVVLVLVVIVVAVLCLRKQSNGREAEYSDKHGQYLIGHGTKVYIDPFTYEDPN
EAVREFAKEIDV
SYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRRE
FLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGM
LRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGG
KIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLP
PPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSAL
DKMIRNPASLKIVARENGGASHPLLD
QRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKK
ILASVQHMK
SQAKPGTPGGTGGPAPQY
Sequence length 987
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Axon guidance   EPH-Ephrin signaling
EPHB-mediated forward signaling
Ephrin signaling
EPH-ephrin mediated repulsion of cells
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
23063927
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
23063927
Capillary malformation-arteriovenous malformation CAPILLARY MALFORMATION-ARTERIOVENOUS MALFORMATION 2 rs797044451, rs137853217, rs137853218, rs1348578241, rs1580386963, rs878854569, rs1060503441, rs1060503439, rs1554049394, rs1554050230, rs1554050584, rs1384480619, rs1554045819, rs983011713, rs1204340475
View all (14 more)
28730721, 29444212, 28687708, 30760892, 30578106
Gastric cancer Gastric Adenocarcinoma rs137854571, rs63751108, rs34612342, rs121908383, rs121909144, rs121909775, rs121909219, rs121909223, rs63750871, rs80359530, rs121964873, rs121913530, rs606231203, rs121918505, rs587776802
View all (244 more)
Unknown
Disease term Disease name Evidence References Source
Crohn disease Crohn Disease 26192919 ClinVar
Vein of galen aneurysm Vein of Galen aneurysm 29444212 ClinVar
Capillary Malformation-Arteriovenous Malformation capillary malformation-arteriovenous malformation syndrome GenCC
Takayasu Arteritis Takayasu Arteritis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Associate 29769567
Adenocarcinoma of Lung Associate 32733636
Adenoma Stimulate 21393996
Aneuploidy Associate 15029258
Arteriovenous Malformations Associate 28687708
Bone Diseases Associate 19664212
Brain Diseases Associate 28214829
Breast Neoplasms Associate 12031094, 15029258, 23063927, 23295955, 24427781, 25831049, 26191333, 27072235, 32635943
Capillary Malformation Arteriovenous Malformation Associate 28687708, 30760892, 32286515, 32635943, 33864021
Carcinogenesis Stimulate 23138393