Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
203228
Gene name Gene Name - the full gene name approved by the HGNC.
C9orf72-SMCR8 complex subunit
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
C9orf72
Synonyms (NCBI Gene) Gene synonyms aliases
ALSFTD, DENND9, DENNL72, FTDALS, FTDALS1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
FTDALS1
Chromosome Chromosome number
9
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9p21.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene plays an important role in the regulation of endosomal trafficking, and has been shown to interact with Rab proteins that are involved in autophagy and endocytic transport. Expansion of a GGGGCC repeat from 2-22 copies to
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs143561967 GGCCCCGGCCCC>-,GGCCCC,GGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCC Pathogenic Genic upstream transcript variant, upstream transcript variant, intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT021644 hsa-miR-142-3p Microarray 17612493
MIRT441028 ebv-miR-BART13-3p HITS-CLIP 22473208
MIRT021644 hsa-miR-142-3p HITS-CLIP 22473208
MIRT441028 ebv-miR-BART13-3p HITS-CLIP 22473208
MIRT021644 hsa-miR-142-3p HITS-CLIP 22473208
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000932 Component P-body IDA 27037575
GO:0001933 Process Negative regulation of protein phosphorylation IMP 27723745
GO:0005085 Function Guanyl-nucleotide exchange factor activity IDA 27103069, 27617292
GO:0005515 Function Protein binding IPI 21516116, 24549040, 25416956, 27103069, 27107012, 27559131, 28195531, 32296183
GO:0005615 Component Extracellular space IDA 24549040
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
614260 28337 ENSG00000147894
Protein
UniProt ID Q96LT7
Protein name Guanine nucleotide exchange factor C9orf72
Protein function Acts as a guanine-nucleotide releasing factor (GEF) for Rab GTPases by promoting the conversion of inactive RAB-GDP to the active form RAB-GTP (PubMed:27103069, PubMed:27193190, PubMed:27617292, PubMed:28195531, PubMed:37821429). Acts as a GEF f
PDB 6LT0 , 6V4U , 7MGE , 7O2W
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15019 C9orf72-like 61 324 C9orf72-like protein family Family
Tissue specificity TISSUE SPECIFICITY: Both isoforms are widely expressed, including kidney, lung, liver, heart, testis and several brain regions, such as cerebellum. Also expressed in the frontal cortex and in lymphoblasts (at protein level). {ECO:0000269|PubMed:21944778,
Sequence
MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV
IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSS
AEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMY
APYPTTHIDVDVNTVKQMPPCHEH
IYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESF
TPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDT
QKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMT
F
Sequence length 481
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Autophagy - animal
Amyotrophic lateral sclerosis
Pathways of neurodegeneration - multiple diseases
 
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyotrophic lateral sclerosis Amyotrophic Lateral Sclerosis, Amyotrophic Lateral Sclerosis, Guam Form, AMYOTROPHIC LATERAL SCLEROSIS 6 (disorder), AMYOTROPHIC LATERAL SCLEROSIS 1, AUTOSOMAL RECESSIVE, Amyotrophic lateral sclerosis rs267607084, rs312262720, rs312262752, rs121908287, rs121908288, rs29001584, rs28941475, rs121434378, rs386134173, rs386134174, rs80356730, rs80356727, rs4884357, rs80356717, rs80356733
View all (171 more)
20801717, 19734901, 20801718, 22959728, 25326098, 27455348, 23587638, 24085347, 29566793, 27713094, 23597494, 24931836, 24256812, 28931804
Apraxia Apraxias rs121908377, rs121908378, rs1135401820, rs1178491246, rs1584969672
Arthritis Juvenile arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 19565504
Cerebellar ataxia Progressive cerebellar ataxia rs28936415, rs199476133, rs540331226, rs797046006, rs863224069, rs138358708, rs1057519429, rs750959420, rs1568440440, rs1597846084, rs759460806, rs761486324, rs1240335250, rs1596489887
Unknown
Disease term Disease name Evidence References Source
Mental depression Depressive disorder ClinVar
Ptosis Blepharoptosis, Ptosis ClinVar
Lateral Sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 1 GenCC
Epilepsy progressive myoclonus epilepsy GenCC
Associations from Text Mining
Disease Name Relationship Type References
Agnosia Associate 26463677
Agraphia Associate 30550541
Agraphia Stimulate 36538154
Alcohol Amnestic Disorder Associate 23922030
Alexia Pure Associate 37648532
Alzheimer Disease Associate 22459598, 22875087, 23053135, 23107433, 23413259, 23588422, 23922030, 24252571, 25207541, 29476165, 30550541, 31810826, 33131137, 34293287, 35661131
View all (2 more)
Amnesia Associate 23695224, 24531155, 24819148
Amnesia Anterograde Associate 23199140
Amyotrophic Lateral Sclerosis Associate 21944778, 22083254, 22305801, 22343411, 22366792, 22366793, 22366794, 22366795, 22406228, 22418734, 22426854, 22445326, 22459598, 22509407, 22637471
View all (338 more)
Amyotrophic Lateral Sclerosis Inhibit 24530272