Gene Gene information from NCBI Gene database.
Entrez ID 203228
Gene name C9orf72-SMCR8 complex subunit
Gene symbol C9orf72
Synonyms (NCBI Gene)
ALSFTDDENND9DENNL72FTDALSFTDALS1
Chromosome 9
Chromosome location 9p21.2
Summary The protein encoded by this gene plays an important role in the regulation of endosomal trafficking, and has been shown to interact with Rab proteins that are involved in autophagy and endocytic transport. Expansion of a GGGGCC repeat from 2-22 copies to
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs143561967 GGCCCCGGCCCC>-,GGCCCC,GGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCC,GGCCCCGGCCCCGGCCCCGGCCCCGGCCC Pathogenic Genic upstream transcript variant, upstream transcript variant, intron variant
miRNA miRNA information provided by mirtarbase database.
204
miRTarBase ID miRNA Experiments Reference
MIRT021644 hsa-miR-142-3p Microarray 17612493
MIRT441028 ebv-miR-BART13-3p HITS-CLIP 22473208
MIRT021644 hsa-miR-142-3p HITS-CLIP 22473208
MIRT441028 ebv-miR-BART13-3p HITS-CLIP 22473208
MIRT021644 hsa-miR-142-3p HITS-CLIP 22473208
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
79
GO ID Ontology Definition Evidence Reference
GO:0000932 Component P-body IDA 27037575
GO:0000932 Component P-body IEA
GO:0001933 Process Negative regulation of protein phosphorylation IMP 27723745
GO:0005085 Function Guanyl-nucleotide exchange factor activity IDA 27103069, 27617292
GO:0005085 Function Guanyl-nucleotide exchange factor activity IDA 37821429
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
614260 28337 ENSG00000147894
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96LT7
Protein name Guanine nucleotide exchange factor C9orf72
Protein function Acts as a guanine-nucleotide releasing factor (GEF) for Rab GTPases by promoting the conversion of inactive RAB-GDP to the active form RAB-GTP (PubMed:27103069, PubMed:27193190, PubMed:27617292, PubMed:28195531, PubMed:37821429). Acts as a GEF f
PDB 6LT0 , 6V4U , 7MGE , 7O2W
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15019 C9orf72-like 61 324 C9orf72-like protein family Family
Tissue specificity TISSUE SPECIFICITY: Both isoforms are widely expressed, including kidney, lung, liver, heart, testis and several brain regions, such as cerebellum. Also expressed in the frontal cortex and in lymphoblasts (at protein level). {ECO:0000269|PubMed:21944778,
Sequence
MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV
IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSS
AEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMY
APYPTTHIDVDVNTVKQMPPCHEH
IYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESF
TPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDT
QKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMT
F
Sequence length 481
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Autophagy - animal
Amyotrophic lateral sclerosis
Pathways of neurodegeneration - multiple diseases
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Frontotemporal dementia and/or amyotrophic lateral sclerosis 1 Pathogenic rs143561967 RCV000192065
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AMYOTROPHIC LATERAL SCLEROSIS ClinVar, Disgenet, GWAS catalog
ClinVar, Disgenet, GWAS catalog
ClinVar, Disgenet, GWAS catalog
ClinVar, Disgenet, GWAS catalog
ClinVar, Disgenet, GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amyotrophic Lateral Sclerosis/Frontotemporal Dementia Uncertain significance; Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHRITIS, JUVENILE CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Agnosia Associate 26463677
★☆☆☆☆
Found in Text Mining only
Agraphia Associate 30550541
★☆☆☆☆
Found in Text Mining only
Agraphia Stimulate 36538154
★☆☆☆☆
Found in Text Mining only
Alcohol Amnestic Disorder Associate 23922030
★☆☆☆☆
Found in Text Mining only
Alexia Pure Associate 37648532
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Associate 22459598, 22875087, 23053135, 23107433, 23413259, 23588422, 23922030, 24252571, 25207541, 29476165, 30550541, 31810826, 33131137, 34293287, 35661131
View all (2 more)
★☆☆☆☆
Found in Text Mining only
Amnesia Associate 23695224, 24531155, 24819148
★☆☆☆☆
Found in Text Mining only
Amnesia Anterograde Associate 23199140
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Associate 21944778, 22083254, 22305801, 22343411, 22366792, 22366793, 22366794, 22366795, 22406228, 22418734, 22426854, 22445326, 22459598, 22509407, 22637471
View all (338 more)
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amyotrophic Lateral Sclerosis Inhibit 24530272
★★☆☆☆
Found in Text Mining + Unknown/Other Associations