Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	200315
Gene name Gene Name - the full gene name approved by the HGNC.	Apolipoprotein B mRNA editing enzyme catalytic subunit 3A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	APOBEC3A
Synonyms (NCBI Gene) Gene synonyms aliases	A3A, ARP3, PHRBN, bK150C2.1
Chromosome Chromosome number	22
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	22q13.1
Summary Summary of gene provided in NCBI Entrez Gene.	This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and fu

Show/Hide all(218)

miRTarBase ID	miRNA	Experiments	Reference
MIRT679809	hsa-miR-212-5p	HITS-CLIP	23824327
MIRT679808	hsa-miR-519d-5p	HITS-CLIP	23824327
MIRT679807	hsa-miR-3653-5p	HITS-CLIP	23824327
MIRT679806	hsa-miR-1976	HITS-CLIP	23824327
MIRT679805	hsa-miR-6790-3p	HITS-CLIP	23824327
MIRT679804	hsa-miR-6821-3p	HITS-CLIP	23824327
MIRT679803	hsa-miR-4757-5p	HITS-CLIP	23824327
MIRT679802	hsa-miR-6744-3p	HITS-CLIP	23824327
MIRT679801	hsa-miR-378a-5p	HITS-CLIP	23824327
MIRT679800	hsa-miR-640	HITS-CLIP	23824327
MIRT679799	hsa-miR-6878-3p	HITS-CLIP	23824327
MIRT679798	hsa-miR-6843-3p	HITS-CLIP	23824327
MIRT679797	hsa-miR-6848-3p	HITS-CLIP	23824327
MIRT731448	hsa-let-7a-3p	Luciferase reporter assay	26991540
MIRT731448	hsa-let-7a-3p	Luciferase reporter assay	26991540
MIRT679809	hsa-miR-212-5p	HITS-CLIP	23824327
MIRT679808	hsa-miR-519d-5p	HITS-CLIP	23824327
MIRT679807	hsa-miR-3653-5p	HITS-CLIP	23824327
MIRT679806	hsa-miR-1976	HITS-CLIP	23824327
MIRT679805	hsa-miR-6790-3p	HITS-CLIP	23824327
MIRT679804	hsa-miR-6821-3p	HITS-CLIP	23824327
MIRT679803	hsa-miR-4757-5p	HITS-CLIP	23824327
MIRT679802	hsa-miR-6744-3p	HITS-CLIP	23824327
MIRT679801	hsa-miR-378a-5p	HITS-CLIP	23824327
MIRT679800	hsa-miR-640	HITS-CLIP	23824327
MIRT679799	hsa-miR-6878-3p	HITS-CLIP	23824327
MIRT679798	hsa-miR-6843-3p	HITS-CLIP	23824327
MIRT679797	hsa-miR-6848-3p	HITS-CLIP	23824327
MIRT789808	hsa-miR-1193	CLIP-seq
MIRT789809	hsa-miR-129-5p	CLIP-seq
MIRT789810	hsa-miR-2392	CLIP-seq
MIRT789811	hsa-miR-3149	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT789813	hsa-miR-3199	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT789816	hsa-miR-4438	CLIP-seq
MIRT789817	hsa-miR-4474-5p	CLIP-seq
MIRT789818	hsa-miR-4532	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789822	hsa-miR-4722-3p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789825	hsa-miR-4777-5p	CLIP-seq
MIRT789826	hsa-miR-4786-3p	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789828	hsa-miR-5095	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT789830	hsa-miR-520a-5p	CLIP-seq
MIRT789831	hsa-miR-525-5p	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq
MIRT789834	hsa-miR-599	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT789816	hsa-miR-4438	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789828	hsa-miR-5095	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq
MIRT789808	hsa-miR-1193	CLIP-seq
MIRT789810	hsa-miR-2392	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT789808	hsa-miR-1193	CLIP-seq
MIRT789810	hsa-miR-2392	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT1932949	hsa-miR-106a	CLIP-seq
MIRT1932950	hsa-miR-106b	CLIP-seq
MIRT789808	hsa-miR-1193	CLIP-seq
MIRT1932951	hsa-miR-122	CLIP-seq
MIRT1932952	hsa-miR-1307	CLIP-seq
MIRT1932953	hsa-miR-17	CLIP-seq
MIRT1932954	hsa-miR-20a	CLIP-seq
MIRT1932955	hsa-miR-20b	CLIP-seq
MIRT789810	hsa-miR-2392	CLIP-seq
MIRT1932956	hsa-miR-302a	CLIP-seq
MIRT1932957	hsa-miR-302b	CLIP-seq
MIRT1932958	hsa-miR-302c	CLIP-seq
MIRT1932959	hsa-miR-302d	CLIP-seq
MIRT1932960	hsa-miR-302e	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT1932961	hsa-miR-3194-3p	CLIP-seq
MIRT789813	hsa-miR-3199	CLIP-seq
MIRT1932962	hsa-miR-372	CLIP-seq
MIRT1932963	hsa-miR-373	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT1932964	hsa-miR-4284	CLIP-seq
MIRT789816	hsa-miR-4438	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789822	hsa-miR-4722-3p	CLIP-seq
MIRT1932965	hsa-miR-4731-5p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789828	hsa-miR-5095	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT1932966	hsa-miR-512-3p	CLIP-seq
MIRT1932967	hsa-miR-519d	CLIP-seq
MIRT1932968	hsa-miR-520a-3p	CLIP-seq
MIRT789830	hsa-miR-520a-5p	CLIP-seq
MIRT1932969	hsa-miR-520b	CLIP-seq
MIRT1932970	hsa-miR-520c-3p	CLIP-seq
MIRT1932971	hsa-miR-520d-3p	CLIP-seq
MIRT1932972	hsa-miR-520e	CLIP-seq
MIRT1932973	hsa-miR-520g	CLIP-seq
MIRT1932974	hsa-miR-520h	CLIP-seq
MIRT789831	hsa-miR-525-5p	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq
MIRT1932975	hsa-miR-93	CLIP-seq
MIRT1932949	hsa-miR-106a	CLIP-seq
MIRT1932950	hsa-miR-106b	CLIP-seq
MIRT789808	hsa-miR-1193	CLIP-seq
MIRT1932951	hsa-miR-122	CLIP-seq
MIRT1932952	hsa-miR-1307	CLIP-seq
MIRT1932953	hsa-miR-17	CLIP-seq
MIRT1932954	hsa-miR-20a	CLIP-seq
MIRT1932955	hsa-miR-20b	CLIP-seq
MIRT789810	hsa-miR-2392	CLIP-seq
MIRT1932956	hsa-miR-302a	CLIP-seq
MIRT1932957	hsa-miR-302b	CLIP-seq
MIRT1932958	hsa-miR-302c	CLIP-seq
MIRT1932959	hsa-miR-302d	CLIP-seq
MIRT1932960	hsa-miR-302e	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT1932961	hsa-miR-3194-3p	CLIP-seq
MIRT1932962	hsa-miR-372	CLIP-seq
MIRT1932963	hsa-miR-373	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT1932964	hsa-miR-4284	CLIP-seq
MIRT789816	hsa-miR-4438	CLIP-seq
MIRT789818	hsa-miR-4532	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT1932965	hsa-miR-4731-5p	CLIP-seq
MIRT789828	hsa-miR-5095	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT1932966	hsa-miR-512-3p	CLIP-seq
MIRT1932967	hsa-miR-519d	CLIP-seq
MIRT1932968	hsa-miR-520a-3p	CLIP-seq
MIRT1932969	hsa-miR-520b	CLIP-seq
MIRT1932970	hsa-miR-520c-3p	CLIP-seq
MIRT1932971	hsa-miR-520d-3p	CLIP-seq
MIRT1932972	hsa-miR-520e	CLIP-seq
MIRT1932973	hsa-miR-520g	CLIP-seq
MIRT1932974	hsa-miR-520h	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT1932975	hsa-miR-93	CLIP-seq
MIRT789809	hsa-miR-129-5p	CLIP-seq
MIRT789811	hsa-miR-3149	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq
MIRT789809	hsa-miR-129-5p	CLIP-seq
MIRT789811	hsa-miR-3149	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq
MIRT789808	hsa-miR-1193	CLIP-seq
MIRT1932951	hsa-miR-122	CLIP-seq
MIRT789809	hsa-miR-129-5p	CLIP-seq
MIRT789810	hsa-miR-2392	CLIP-seq
MIRT789811	hsa-miR-3149	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT789813	hsa-miR-3199	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT789816	hsa-miR-4438	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789828	hsa-miR-5095	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq
MIRT789809	hsa-miR-129-5p	CLIP-seq
MIRT789811	hsa-miR-3149	CLIP-seq
MIRT789812	hsa-miR-3152-3p	CLIP-seq
MIRT789813	hsa-miR-3199	CLIP-seq
MIRT789814	hsa-miR-411	CLIP-seq
MIRT789815	hsa-miR-4258	CLIP-seq
MIRT789816	hsa-miR-4438	CLIP-seq
MIRT789819	hsa-miR-4662a-5p	CLIP-seq
MIRT789820	hsa-miR-4676-5p	CLIP-seq
MIRT789821	hsa-miR-4707-3p	CLIP-seq
MIRT789823	hsa-miR-4735-5p	CLIP-seq
MIRT789824	hsa-miR-4775	CLIP-seq
MIRT789827	hsa-miR-4794	CLIP-seq
MIRT789828	hsa-miR-5095	CLIP-seq
MIRT789829	hsa-miR-5096	CLIP-seq
MIRT789832	hsa-miR-575	CLIP-seq
MIRT789833	hsa-miR-590-3p	CLIP-seq

Show/Hide all(34)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000932	Component	P-body	IBA
GO:0002376	Process	Immune system process	IEA
GO:0003723	Function	RNA binding	IBA
GO:0003824	Function	Catalytic activity	IEA
GO:0004126	Function	Cytidine deaminase activity	IBA
GO:0004126	Function	Cytidine deaminase activity	IDA	16527742, 21123384
GO:0004126	Function	Cytidine deaminase activity	IEA
GO:0004126	Function	Cytidine deaminase activity	IMP	20062055, 22457529
GO:0005515	Function	Protein binding	IPI	22915799, 24557838, 32296183
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	16527742, 21123384, 21835787
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005737	Component	Cytoplasm	IBA
GO:0005737	Component	Cytoplasm	IDA	16527742, 21123384, 21835787
GO:0005737	Component	Cytoplasm	IEA
GO:0008270	Function	Zinc ion binding	IEA
GO:0010526	Process	Transposable element silencing	IDA	16527742, 21123384
GO:0010526	Process	Transposable element silencing	IEA
GO:0016554	Process	Cytidine to uridine editing	IBA
GO:0016787	Function	Hydrolase activity	IEA
GO:0044029	Process	Positive regulation of gene expression via chromosomal CpG island demethylation	IDA	21496894
GO:0044355	Process	Clearance of foreign intracellular DNA	IDA	20062055
GO:0044355	Process	Clearance of foreign intracellular DNA	IEA
GO:0045071	Process	Negative regulation of viral genome replication	IDA	16527742
GO:0045071	Process	Negative regulation of viral genome replication	IEA
GO:0045087	Process	Innate immune response	IDA	21123384
GO:0045087	Process	Innate immune response	IEA
GO:0045869	Process	Negative regulation of single stranded viral RNA replication via double stranded DNA intermediate	IBA
GO:0046872	Function	Metal ion binding	IEA
GO:0051607	Process	Defense response to virus	IBA
GO:0051607	Process	Defense response to virus	IDA	21123384, 22457529
GO:0051607	Process	Defense response to virus	IEA
GO:0070383	Process	DNA cytosine deamination	IBA

MIM	HGNC	e!Ensembl
607109	17343	ENSG00000128383

	KEGG		Reactome
	Viral life cycle - HIV-1 Human immunodeficiency virus 1 infection		mRNA Editing: C to U Conversion Formation of the Editosome

Show/Hide Unknown Diseases (1)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Breast cancer	Breast cancer	N/A	N/A	GWAS

Show/Hide Text Mining Associations (57)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Adenocarcinoma of Lung	Associate	33788831
Alzheimer Disease	Associate	27149507
Amyotrophic Lateral Sclerosis	Associate	27149507
beta Thalassemia	Associate	30059493
Blister	Associate	27120332
Breast Neoplasms	Associate	23715497, 24728294, 26920143, 27149507, 27643540, 28062980, 31533728, 31841499, 32176735
Carcinoma Hepatocellular	Associate	31322199, 37903974
Carcinoma Renal Cell	Associate	40191862
Cardiomyopathies	Associate	32570581
Cell Transformation Neoplastic	Associate	30886206
Cholangitis Sclerosing	Associate	35902635
COVID 19	Associate	36100631, 36610792
Cytomegalovirus Infections	Associate	28956761
Depressive Disorder	Inhibit	22948384
Endometrial Neoplasms	Associate	36394079
Epidermolysis Bullosa Junctional	Associate	27120332
Fever	Stimulate	28340680
Hematologic Neoplasms	Associate	27149507
Hepatitis B	Associate	30811755
Hepatitis B Chronic	Associate	31322199
Hereditary Breast and Ovarian Cancer Syndrome	Associate	25298230
Hypertension Pulmonary	Associate	27149507
Hypertensive Retinopathy	Associate	32570581
Hypoxia	Associate	27149507, 30791937
Immunologic Deficiency Syndromes	Associate	32570581
Infections	Associate	27890786
Inflammation	Associate	27149507, 28215840, 30886206, 33483601
Leukemia	Associate	28655787
Leukemia Myeloid Acute	Associate	25807502, 28655787
Liver Failure Acute	Associate	26416327
Lung Neoplasms	Associate	29140415, 37407818
Lupus Erythematosus Systemic	Associate	33846459
Lymphatic Metastasis	Associate	32285256
Lymphopenia	Associate	33846459
Malaria	Stimulate	35503749
Metabolic Diseases	Associate	32570581
Mouth Neoplasms	Associate	28878238
Neoplasm Metastasis	Associate	37821454
Neoplasms	Associate	21368204, 24728294, 25298230, 26258849, 26755635, 26832400, 27155849, 27940951, 29140415, 30348839, 31249028, 31533728, 32176735, 32285256, 33707442 View all (18 more)
Neoplasms	Inhibit	25502777
Neoplasms	Stimulate	33853956
Neoplasms Basal Cell	Associate	34873230
Neoplasms Squamous Cell	Associate	32560902
Neurodegenerative Diseases	Associate	32570581
Ovarian Neoplasms	Associate	34745121, 34873230
Pancreatic Neoplasms	Associate	25502777
Papillomavirus Infections	Associate	29367246
Prostatic Neoplasms	Associate	29140415
Psychotic Disorders	Inhibit	22948384
Radiation Injuries	Associate	33788831
Squamous Cell Carcinoma of Head and Neck	Associate	28878238, 30980272
Stomach Neoplasms	Associate	30431097
Tertiary Lymphoid Structures	Stimulate	32176735
Urinary Bladder Neoplasms	Associate	23284801, 29028944
Uterine Cervical Neoplasms	Associate	33017516, 36889736
Uterine Cervicitis	Associate	29950685
Virus Diseases	Stimulate	34389714, 37474103

APOBEC3A (apolipoprotein B mRNA editing enzyme catalytic subunit 3A)