Gene Gene information from NCBI Gene database.
Entrez ID 1952
Gene name Cadherin EGF LAG seven-pass G-type receptor 2
Gene symbol CELSR2
Synonyms (NCBI Gene)
ADGRC2CDHF10EGFL2Flamingo1MEGF3
Chromosome 1
Chromosome location 1p13.3
Summary The protein encoded by this gene is a member of the flamingo subfamily, part of the cadherin superfamily. The flamingo subfamily consists of nonclassic-type cadherins; a subpopulation that does not interact with catenins. The flamingo cadherins are locate
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs561330579 C>G,T Likely-pathogenic Coding sequence variant, missense variant
rs773722162 ->AGAAGAGGAGGA Likely-pathogenic Inframe insertion, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
564
miRTarBase ID miRNA Experiments Reference
MIRT037380 hsa-miR-744-3p CLASH 23622248
MIRT659613 hsa-miR-10a-3p HITS-CLIP 23824327
MIRT659612 hsa-miR-627-3p HITS-CLIP 23824327
MIRT659611 hsa-miR-7111-3p HITS-CLIP 23824327
MIRT659610 hsa-miR-6780a-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0003341 Process Cilium movement IEA
GO:0004888 Function Transmembrane signaling receptor activity IEA
GO:0004930 Function G protein-coupled receptor activity IEA
GO:0004930 Function G protein-coupled receptor activity NAS 10907856
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604265 3231 ENSG00000143126
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9HCU4
Protein name Cadherin EGF LAG seven-pass G-type receptor 2 (Cadherin family member 10) (Epidermal growth factor-like protein 2) (EGF-like protein 2) (Flamingo homolog 3) (Multiple epidermal growth factor-like domains protein 3) (Multiple EGF-like domains protein 3)
Protein function Receptor that may have an important role in cell/cell signaling during nervous system formation.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin 186 280 Cadherin domain Domain
PF00028 Cadherin 294 390 Cadherin domain Domain
PF00028 Cadherin 404 496 Cadherin domain Domain
PF00028 Cadherin 510 601 Cadherin domain Domain
PF00028 Cadherin 615 703 Cadherin domain Domain
PF00028 Cadherin 717 806 Cadherin domain Domain
PF00028 Cadherin 820 912 Cadherin domain Domain
PF00028 Cadherin 926 1014 Cadherin domain Domain
PF12661 hEGF 1337 1358 Human growth factor-like EGF Domain
PF02210 Laminin_G_2 1395 1554 Laminin G domain Domain
PF00008 EGF 1578 1608 EGF-like domain Domain
PF02210 Laminin_G_2 1644 1770 Laminin G domain Domain
PF00053 Laminin_EGF 1924 1970 Laminin EGF domain Domain
PF16489 GAIN 2051 2289 GPCR-Autoproteolysis INducing (GAIN) domain Domain
PF01825 GPS 2317 2362 GPCR proteolysis site, GPS, motif Motif
PF00002 7tm_2 2373 2605 7 transmembrane receptor (Secretin family) Family
Tissue specificity TISSUE SPECIFICITY: Highest expression in brain and testis.
Sequence
MRSPATGVPLPTPPPPLLLLLLLLLPPPLLGDQVGPCRSLGSRGRGSSGACAPMGWLCPS
SASNLWLYTSRCRDAGTELTGHLVPHHDGLRVWCPESEAHIPLPPAPEGCPWSCRLLGIG
GHLSPQGKLTLPEEHPCLKAPRLRCQSCKLAQAPGLRAGERSPEESLGGRRKRNVNTAPQ
FQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDALFDSRSNQFFSLDPVTGA
VTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVT
DTNDHDPVFEQQEYKESLRE
NLEVGYEVLTVRATDGDAPPNANILYRLLEGSGGSPSEVFEIDPRSGVIRTRGPVDREEV
ESYQLTVEASDQGRDPGPRSTTAAVFLSVE
DDNDNAPQFSEKRYVVQVREDVTPGAPVLR
VTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGG
RPPLSNVSGLVTVQVL
DINDNAPIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARL
EYRLAGVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTV
L
DVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDAHSVITYQITSGNTRNRFSITS
QSGGGLVSLALPLDYKLERQYVLAVTASDGTRQDTAQIVVNVT
DANTHRPVFQSSHYTVN
VNEDRPAGTTVVLISATDEDTGENARITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVS
YTLAITARDNGIPQKSDTTYLEILVN
DVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISAT
DRDSGLNGRVFYTFQGGDDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPP
ARTPMEVTVTVL
DVNDNPPVFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQI
VEGNIPEVFQLDIFSGELTALVDLDYEDRPEYVLVIQATSAPLVSRATVHVRLL
DRNDNP
PVLGNFEILFNNYVTNRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTG
ELKLSRALDNNRPLEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPER
FLSPLLGLFIQAVAATLATPPDHVVVFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFL
PSEDLQERLYLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSS
VLFRPIHPVGGLRCRCPPGFTGDYCETEVDLCYSRPCGPHGRCRSREGGYTCLCRDGYTG
EHCEVSARSGRCTPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPYCQVTTRSFPAHSFITF
RGLRQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAGESTTTVS
PFVPGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGVALRFGSVLG
NYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRMRQFVGCMRNLQVDSR
HIDMAD
FIANNGTVPGCPAKKNVCDSNTCHNGGTCVNQWDAFSCECPLGFGGKSCAQEMANPQHFL
GSSLVAWHGLSLPISQPWYLSLMFRTRQADGVLLQAITRGRSTITLQLREGHVMLSVEGT
GLQASSLRLEPGRANDGDWHHAQLALGASGGPGHAILSFDYGQQRAEGNLGPRLHGLHLS
NITVGGIPGPAGGVARGFRGCLQGVRVSDT
PEGVNSLDPSHGESINVEQGCSLPDPCDSN
PCPANSYCSNDWDSYSCSCDPGYYGDNCTNVCDLNPCEHQSVCTRKPSAPHGYTCECPPN
YLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCNKTSGECHCKENHYRPPGSPT
CLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAEVTTNGCEVNYDSCPRAI
EAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPNLFNCTSITFSELKGFAERL
QRNESGLDSGRSQQLALLLRNATQHTAGYFGSDVKVAYQLATRLLAHESTQRGFGLSATQ
DVHFTENLLRVGSALLDTANKRHWELIQQTEGGTAWLLQHYEAYASALAQNMRHTYLSPF
TIVTPNIVISVVRLDKGNFAGAKLPRYEALRGEQPPDLETTVILPESVFRETPPVVRPAG
PGEAQEPEELARRQRRHPELSQGEAVASVIIYRTLAGLLPHNYDPDKRSLRVPKRPIINT
PVVSISVHD
DEELLPRALDKPVTVQFRLLETEERTKPICVFWNHSILVSGTGGWSARGCE
VVFRNESHVSCQCNHMTSFAVL
MDVSRRENGEILPLKTLTYVALGVTLAALLLTFFFLTL
LRILRSNQHGIRRNLTAALGLAQLVFLLGINQADLPFACTVIAILLHFLYLCTFSWALLE
ALHLYRALTEVRDVNTGPMRFYYMLGWGVPAFITGLAVGLDPEGYGNPDFCWLSIYDTLI
WSFAGPVAFAVSMSVFLYILAARASCAAQRQGFEKKGPVSGLQPSFAVLLLLSATWLLAL
LSVNSDTLLFHYLFATCNCIQGPFI
FLSYVVLSKEVRKALKLACSRKPSPDPALTTKSTL
TSSYNCPSPYADGRLYQPYGDSAGSLHSTSRSGKSQPSYIPFLLREESALNPGQGPPGLG
DPGSLFLEGQDQQHDPDTDSDSDLSLEDDQSGSYASTHSSDSEEEEEEEEEEAAFPGEQG
WDSLLGPGAERLPLHSTPKDGGPGPGKAPWPGDFGTTAKESSGNGAPEERLRENGDALSR
EGSLGPLPGSSAQPHKGILKKKCLPTISEKSSLLRLPLEQCTGSSRGSSASEGSRGGPPP
RPPPRQSLQEQLNGVMPIAMSIKAGTVDEDSSGSEFLFFNFLH
Sequence length 2923
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
69
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Esophageal atresia/tracheoesophageal fistula Likely pathogenic rs1223692503 RCV001172288
Global developmental delay Likely pathogenic rs561330579 RCV000454284
Intellectual disability Likely pathogenic rs561330579 RCV000454284
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
CELSR2-related disorder Likely benign; Benign; Conflicting classifications of pathogenicity; Uncertain significance rs777511741, rs6698843, rs147160924, rs149683589, rs201869358, rs684138, rs653635, rs6689614, rs611917, rs562694493, rs41279712, rs368143806, rs139406620, rs377543974, rs12567377
View all (43 more)
RCV003978439
RCV003984173
RCV003933349
RCV003903560
RCV003933667
RCV003968730
RCV003978576
RCV003978800
RCV003978479
RCV003926668
RCV003973665
RCV003936621
RCV003943515
RCV003973564
RCV003926564
RCV003906715
RCV003919264
RCV003894741
RCV003919677
RCV003929648
RCV003981468
RCV003981728
RCV003904315
RCV003974218
RCV003961628
RCV003959553
RCV003917175
RCV003917193
RCV003917222
RCV003917231
RCV003929424
RCV003951410
RCV003932127
RCV003932174
RCV003934297
RCV003944343
RCV003956769
RCV003954572
RCV003967101
RCV003954798
RCV003942466
RCV003915985
RCV003926083
RCV003978326
RCV003905878
RCV003920681
RCV003975630
RCV003940805
RCV003950681
RCV003902830
RCV003912906
RCV003902831
RCV003902832
RCV003902833
RCV003970496
RCV003902956
RCV003933098
RCV003974444
Cervical cancer Benign rs112983744 RCV005910756
Idiopathic scoliosis Uncertain significance rs141489111 RCV000656435
Lung cancer Likely benign rs140655472 RCV005931354
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acute Coronary Syndrome Associate 25969834, 38252350
Agenesis of Cerebellar Vermis Associate 28052552
Angina Pectoris Associate 33152005
Asthma Associate 33152005
Calcinosis Associate 24725463
Carcinoma Hepatocellular Associate 32293343
Cardiovascular Diseases Associate 24725463
Carotid Artery Diseases Associate 19951432
Cerebral Infarction Associate 26464717
Ciliopathies Associate 27894351