Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1798
Gene name Gene Name - the full gene name approved by the HGNC.
Dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
DPAGT1
Synonyms (NCBI Gene) Gene synonyms aliases
ALG7, CDG-Ij, CDG1J, CMS13, CMSTA2, D11S366, DGPT, DPAGT, DPAGT2, G1PT, GPT, UAGT, UGAT
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDG1J, CMS13
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q23.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is an enzyme that catalyzes the first step in the dolichol-linked oligosaccharide pathway for glycoprotein biosynthesis. This enzyme belongs to the glycosyltransferase family 4. This protein is an integral membrane protein
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs138544311 A>C Likely-benign, conflicting-interpretations-of-pathogenicity, not-provided Coding sequence variant, intron variant, missense variant, 3 prime UTR variant, non coding transcript variant
rs387907245 A>C Pathogenic Missense variant, coding sequence variant, intron variant
rs397515321 ->G Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs772988029 G>A Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs1450090350 A>G Likely-pathogenic Non coding transcript variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT027764 hsa-miR-98-5p Microarray 19088304
MIRT943610 hsa-let-7a CLIP-seq
MIRT943611 hsa-let-7b CLIP-seq
MIRT943612 hsa-let-7c CLIP-seq
MIRT943613 hsa-let-7d CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003975 Function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity IBA 21873635
GO:0003975 Function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity IDA 8179616, 29459785
GO:0003975 Function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity IMP 12872255
GO:0003975 Function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity TAS
GO:0003976 Function UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity IDA 6289658
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
191350 2995 ENSG00000172269
Protein
UniProt ID Q9H3H5
Protein name UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.15) (GlcNAc-1-P transferase) (G1PT) (GPT) (N-acetylglucosamine-1-phosphate transferase)
Protein function UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. The assembly
PDB 5LEV , 5O5E , 6BW5 , 6BW6 , 6FM9 , 6FWZ , 6JQ3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00953 Glycos_transf_4 98 270 Glycosyl transferase family 4 Family
Sequence
MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
HNWYPSRVFVGDTFCYFAGMTFAVVGILGH
FSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
MTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLVRLFYDV
Sequence length 408
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  N-Glycan biosynthesis
Metabolic pathways
  Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
Defective DPAGT1 causes DPAGT1-CDG (CDG-1j) and CMSTA2
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
25944804
Colorectal neoplasms Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
25944804
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Myasthenic Syndrome congenital myasthenic syndrome 13 GenCC
Associations from Text Mining
Disease Name Relationship Type References
Alcohol Related Disorders Associate 23249953
Brain Diseases Associate 23249953
Breast Neoplasms Associate 37463446
Carcinoma Squamous Cell Stimulate 19549906
Congenital disorder of glycosylation type 1J Associate 23591138
Congenital Disorders of Glycosylation Associate 23249953, 26805780, 33407696
Epilepsy Associate 23249953
Facial Dysmorphism with Multiple Malformations Associate 23249953
Intellectual Disability Associate 23249953, 24759841
Lymphoma B Cell Associate 24069324