Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	171484
Gene name	Family with sequence similarity 9 member C
Gene symbol	FAM9C
Synonyms (NCBI Gene)	TEX39C
Chromosome	X
Chromosome location	Xp22.2
Summary	This gene is a member of a gene family which arose through duplication on the X chromosome. The encoded protein may be localized to the nucleus as the protein contains several nuclear localization signals, and has similarity to a synaptonemal complex prot

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Show/Hide all (209)

miRTarBase ID	miRNA	Experiments	Reference
MIRT720588	hsa-miR-6072	HITS-CLIP	19536157
MIRT720587	hsa-miR-6891-3p	HITS-CLIP	19536157
MIRT720586	hsa-miR-6734-3p	HITS-CLIP	19536157
MIRT720585	hsa-miR-3667-3p	HITS-CLIP	19536157
MIRT720584	hsa-miR-136-5p	HITS-CLIP	19536157
MIRT639116	hsa-miR-627-3p	HITS-CLIP	19536157
MIRT720583	hsa-miR-515-5p	HITS-CLIP	19536157
MIRT720582	hsa-miR-519e-5p	HITS-CLIP	19536157
MIRT720581	hsa-miR-670-3p	HITS-CLIP	19536157
MIRT720580	hsa-miR-629-3p	HITS-CLIP	19536157
MIRT708505	hsa-miR-6750-3p	HITS-CLIP	19536157
MIRT708504	hsa-miR-3680-5p	HITS-CLIP	19536157
MIRT708503	hsa-miR-3917	HITS-CLIP	19536157
MIRT708502	hsa-miR-7114-5p	HITS-CLIP	19536157
MIRT708501	hsa-miR-7-5p	HITS-CLIP	19536157
MIRT708500	hsa-miR-6077	HITS-CLIP	19536157
MIRT708499	hsa-miR-3190-3p	HITS-CLIP	19536157
MIRT708498	hsa-miR-6833-5p	HITS-CLIP	19536157
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT642771	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT642770	hsa-miR-103a-3p	HITS-CLIP	23824327
MIRT642769	hsa-miR-107	HITS-CLIP	23824327
MIRT617310	hsa-miR-3140-3p	HITS-CLIP	23824327
MIRT617309	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT642768	hsa-miR-7156-3p	HITS-CLIP	23824327
MIRT642767	hsa-miR-1301-3p	HITS-CLIP	23824327
MIRT642766	hsa-miR-5047	HITS-CLIP	23824327
MIRT642765	hsa-miR-6516-5p	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617305	hsa-miR-507	HITS-CLIP	23824327
MIRT617304	hsa-miR-557	HITS-CLIP	23824327
MIRT617303	hsa-miR-3680-3p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT642773	hsa-miR-208a-5p	HITS-CLIP	23824327
MIRT642772	hsa-miR-208b-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT642771	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT642770	hsa-miR-103a-3p	HITS-CLIP	23824327
MIRT642769	hsa-miR-107	HITS-CLIP	23824327
MIRT617310	hsa-miR-3140-3p	HITS-CLIP	23824327
MIRT617309	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT642768	hsa-miR-7156-3p	HITS-CLIP	23824327
MIRT642767	hsa-miR-1301-3p	HITS-CLIP	23824327
MIRT642766	hsa-miR-5047	HITS-CLIP	23824327
MIRT642765	hsa-miR-6516-5p	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617305	hsa-miR-507	HITS-CLIP	23824327
MIRT617304	hsa-miR-557	HITS-CLIP	23824327
MIRT617303	hsa-miR-3680-3p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT639116	hsa-miR-627-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT639115	hsa-miR-4768-5p	HITS-CLIP	23824327
MIRT639114	hsa-miR-6833-3p	HITS-CLIP	23824327
MIRT617307	hsa-miR-6809-3p	HITS-CLIP	23824327
MIRT639113	hsa-miR-1305	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT617310	hsa-miR-3140-3p	HITS-CLIP	23824327
MIRT617309	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT617307	hsa-miR-6809-3p	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617305	hsa-miR-507	HITS-CLIP	23824327
MIRT617304	hsa-miR-557	HITS-CLIP	23824327
MIRT617303	hsa-miR-3680-3p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT444143	hsa-miR-219a-1-3p	PAR-CLIP	22100165
MIRT444142	hsa-miR-571	PAR-CLIP	22100165
MIRT444139	hsa-miR-8081	PAR-CLIP	22100165
MIRT444143	hsa-miR-219a-1-3p	PAR-CLIP	22100165
MIRT444142	hsa-miR-571	PAR-CLIP	22100165
MIRT444141	hsa-miR-1273e	PAR-CLIP	22100165
MIRT444139	hsa-miR-8081	PAR-CLIP	22100165
MIRT441421	hsa-miR-519a-3p	PAR-CLIP	22100165
MIRT441420	hsa-miR-519b-3p	PAR-CLIP	22100165
MIRT441419	hsa-miR-519c-3p	PAR-CLIP	22100165
MIRT441418	hsa-miR-302a-3p	PAR-CLIP	22100165
MIRT441417	hsa-miR-302b-3p	PAR-CLIP	22100165
MIRT441416	hsa-miR-302c-3p	PAR-CLIP	22100165
MIRT441415	hsa-miR-302d-3p	PAR-CLIP	22100165
MIRT441414	hsa-miR-302e	PAR-CLIP	22100165
MIRT441413	hsa-miR-372-3p	PAR-CLIP	22100165
MIRT441412	hsa-miR-373-3p	PAR-CLIP	22100165
MIRT441411	hsa-miR-520a-3p	PAR-CLIP	22100165
MIRT441410	hsa-miR-520b	PAR-CLIP	22100165
MIRT441409	hsa-miR-520c-3p	PAR-CLIP	22100165
MIRT441408	hsa-miR-520d-3p	PAR-CLIP	22100165
MIRT441407	hsa-miR-520e	PAR-CLIP	22100165
MIRT441406	hsa-miR-4427	PAR-CLIP	22100165
MIRT441405	hsa-miR-5187-3p	PAR-CLIP	22100165
MIRT441404	hsa-miR-4680-3p	PAR-CLIP	22100165
MIRT441403	hsa-miR-5189-3p	PAR-CLIP	22100165
MIRT720588	hsa-miR-6072	HITS-CLIP	19536157
MIRT720587	hsa-miR-6891-3p	HITS-CLIP	19536157
MIRT720586	hsa-miR-6734-3p	HITS-CLIP	19536157
MIRT720585	hsa-miR-3667-3p	HITS-CLIP	19536157
MIRT720584	hsa-miR-136-5p	HITS-CLIP	19536157
MIRT639116	hsa-miR-627-3p	HITS-CLIP	19536157
MIRT720583	hsa-miR-515-5p	HITS-CLIP	19536157
MIRT720582	hsa-miR-519e-5p	HITS-CLIP	19536157
MIRT720581	hsa-miR-670-3p	HITS-CLIP	19536157
MIRT720580	hsa-miR-629-3p	HITS-CLIP	19536157
MIRT708505	hsa-miR-6750-3p	HITS-CLIP	19536157
MIRT708504	hsa-miR-3680-5p	HITS-CLIP	19536157
MIRT708503	hsa-miR-3917	HITS-CLIP	19536157
MIRT708502	hsa-miR-7114-5p	HITS-CLIP	19536157
MIRT708501	hsa-miR-7-5p	HITS-CLIP	19536157
MIRT708500	hsa-miR-6077	HITS-CLIP	19536157
MIRT708499	hsa-miR-3190-3p	HITS-CLIP	19536157
MIRT708498	hsa-miR-6833-5p	HITS-CLIP	19536157
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT642771	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT642770	hsa-miR-103a-3p	HITS-CLIP	23824327
MIRT642769	hsa-miR-107	HITS-CLIP	23824327
MIRT617310	hsa-miR-3140-3p	HITS-CLIP	23824327
MIRT617309	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT642768	hsa-miR-7156-3p	HITS-CLIP	23824327
MIRT642767	hsa-miR-1301-3p	HITS-CLIP	23824327
MIRT642766	hsa-miR-5047	HITS-CLIP	23824327
MIRT642765	hsa-miR-6516-5p	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617305	hsa-miR-507	HITS-CLIP	23824327
MIRT617304	hsa-miR-557	HITS-CLIP	23824327
MIRT617303	hsa-miR-3680-3p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT642773	hsa-miR-208a-5p	HITS-CLIP	23824327
MIRT642772	hsa-miR-208b-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT642771	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT642770	hsa-miR-103a-3p	HITS-CLIP	23824327
MIRT642769	hsa-miR-107	HITS-CLIP	23824327
MIRT617310	hsa-miR-3140-3p	HITS-CLIP	23824327
MIRT617309	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT642768	hsa-miR-7156-3p	HITS-CLIP	23824327
MIRT642767	hsa-miR-1301-3p	HITS-CLIP	23824327
MIRT642766	hsa-miR-5047	HITS-CLIP	23824327
MIRT642765	hsa-miR-6516-5p	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617305	hsa-miR-507	HITS-CLIP	23824327
MIRT617304	hsa-miR-557	HITS-CLIP	23824327
MIRT617303	hsa-miR-3680-3p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT639116	hsa-miR-627-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT639115	hsa-miR-4768-5p	HITS-CLIP	23824327
MIRT639114	hsa-miR-6833-3p	HITS-CLIP	23824327
MIRT617307	hsa-miR-6809-3p	HITS-CLIP	23824327
MIRT639113	hsa-miR-1305	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT617312	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT617311	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT617310	hsa-miR-3140-3p	HITS-CLIP	23824327
MIRT617309	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT617308	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT617307	hsa-miR-6809-3p	HITS-CLIP	23824327
MIRT617306	hsa-miR-450b-5p	HITS-CLIP	23824327
MIRT617305	hsa-miR-507	HITS-CLIP	23824327
MIRT617304	hsa-miR-557	HITS-CLIP	23824327
MIRT617303	hsa-miR-3680-3p	HITS-CLIP	23824327
MIRT617302	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT444143	hsa-miR-219a-1-3p	PAR-CLIP	22100165
MIRT444142	hsa-miR-571	PAR-CLIP	22100165
MIRT444139	hsa-miR-8081	PAR-CLIP	22100165
MIRT444143	hsa-miR-219a-1-3p	PAR-CLIP	22100165
MIRT444142	hsa-miR-571	PAR-CLIP	22100165
MIRT444141	hsa-miR-1273e	PAR-CLIP	22100165
MIRT444139	hsa-miR-8081	PAR-CLIP	22100165
MIRT441421	hsa-miR-519a-3p	PAR-CLIP	22100165
MIRT441420	hsa-miR-519b-3p	PAR-CLIP	22100165
MIRT441419	hsa-miR-519c-3p	PAR-CLIP	22100165
MIRT441418	hsa-miR-302a-3p	PAR-CLIP	22100165
MIRT441417	hsa-miR-302b-3p	PAR-CLIP	22100165
MIRT441416	hsa-miR-302c-3p	PAR-CLIP	22100165
MIRT441415	hsa-miR-302d-3p	PAR-CLIP	22100165
MIRT441414	hsa-miR-302e	PAR-CLIP	22100165
MIRT441413	hsa-miR-372-3p	PAR-CLIP	22100165
MIRT441412	hsa-miR-373-3p	PAR-CLIP	22100165
MIRT441411	hsa-miR-520a-3p	PAR-CLIP	22100165
MIRT441410	hsa-miR-520b	PAR-CLIP	22100165
MIRT441409	hsa-miR-520c-3p	PAR-CLIP	22100165
MIRT441408	hsa-miR-520d-3p	PAR-CLIP	22100165
MIRT441407	hsa-miR-520e	PAR-CLIP	22100165
MIRT441406	hsa-miR-4427	PAR-CLIP	22100165
MIRT441405	hsa-miR-5187-3p	PAR-CLIP	22100165
MIRT441404	hsa-miR-4680-3p	PAR-CLIP	22100165
MIRT441403	hsa-miR-5189-3p	PAR-CLIP	22100165
MIRT988913	hsa-miR-1256	CLIP-seq
MIRT988914	hsa-miR-3128	CLIP-seq
MIRT988915	hsa-miR-3692	CLIP-seq
MIRT988916	hsa-miR-4527	CLIP-seq
MIRT988917	hsa-miR-4720-5p	CLIP-seq
MIRT988918	hsa-miR-4799-3p	CLIP-seq
MIRT988919	hsa-miR-495	CLIP-seq

Show/Hide all (5)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000795	Component	Synaptonemal complex	IBA
GO:0005515	Function	Protein binding	IPI	25416956, 32296183, 33961781
GO:0005634	Component	Nucleus	IEA
GO:0007286	Process	Spermatid development	IBA
GO:0051321	Process	Meiotic cell cycle	IBA

MIM	HGNC	e!Ensembl
300479	18405	ENSG00000187268

Q8IZT9

Protein name

Protein FAM9C

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF04803	Cor1	76 → 163	Cor1/Xlr/Xmr conserved region	Coiled-coil

Tissue specificity

TISSUE SPECIFICITY: Expressed exclusively in testis. {ECO:0000269|PubMed:12213195}.

Sequence

MAAKDQLEVQVMAAQEMELAGKDPVSHEHEERKPVTETKEGDVTDEHGERGSFAETDEHT
GVDTKELEDIAADIKEHLAAKRKRIEKIAKACSEIKNRIKNVLRTTQLKRQKRDYRISLK
LPNVLEEFITDEQKDEEGDGEKEEQIKIFQEQQKRWQQDGKGTERD

Sequence length

166

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (3)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
ASTHMA	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
CHILDHOOD ONSET ASTHMA	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SEVERE ACUTE RESPIRATORY SYNDROME	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References	Evidence Score
Associations from Text MiningDisease associations identified through Pubtator
Azoospermia Nonobstructive	Associate	36017582	★★★★★ ★☆☆☆☆ Found in Text Mining only

FAM9C (family with sequence similarity 9 member C)