Gene Gene information from NCBI Gene database.
Entrez ID 1630
Gene name DCC netrin 1 receptor
Gene symbol DCC
Synonyms (NCBI Gene)
CRC18CRCR1HGPPS2IGDCC1MRMV1NTN1R1
Chromosome 18
Chromosome location 18q21.2
Summary This gene encodes a netrin 1 receptor. The transmembrane protein is a member of the immunoglobulin superfamily of cell adhesion molecules, and mediates axon guidance of neuronal growth cones towards sources of netrin 1 ligand. The cytoplasmic tail interac
SNPs SNP information provided by dbSNP.
22
SNP ID Visualize variation Clinical significance Consequence
rs121912967 T>C Pathogenic Missense variant, genic upstream transcript variant, coding sequence variant
rs199651452 A>T Pathogenic Missense variant, coding sequence variant
rs387906555 C>A,G,T Pathogenic Missense variant, coding sequence variant
rs748112308 G>A Pathogenic Coding sequence variant, missense variant
rs754914260 C>A,T Pathogenic Stop gained, synonymous variant, genic upstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
195
miRTarBase ID miRNA Experiments Reference
MIRT022668 hsa-miR-124-3p Microarray 18668037
MIRT721068 hsa-miR-3606-3p HITS-CLIP 19536157
MIRT721067 hsa-miR-513a-3p HITS-CLIP 19536157
MIRT721066 hsa-miR-513c-3p HITS-CLIP 19536157
MIRT721065 hsa-miR-105-5p HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SOX9 Activation 19745029
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0001764 Process Neuron migration IBA
GO:0001764 Process Neuron migration IEA
GO:0004888 Function Transmembrane signaling receptor activity TAS 8861902
GO:0005515 Function Protein binding IPI 11527412, 12011067, 16537496, 18585357, 19721007, 20434207, 21642953, 22084112, 26190107
GO:0005829 Component Cytosol TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
120470 2701 ENSG00000187323
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P43146
Protein name Netrin receptor DCC (Colorectal cancer suppressor) (Immunoglobulin superfamily DCC subclass member 1) (Tumor suppressor protein DCC)
Protein function Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal growth cones in the developing nervous system upon ligand binding. Its association with UNC5 proteins may trigger signaling for axon repulsion. It also acts as
PDB 2ED7 , 2ED8 , 2ED9 , 2EDB , 2EDD , 2EDE , 3AU4 , 4URT , 5X83
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 140 230 Immunoglobulin I-set domain Domain
PF07679 I-set 240 327 Immunoglobulin I-set domain Domain
PF07679 I-set 331 417 Immunoglobulin I-set domain Domain
PF00041 fn3 430 514 Fibronectin type III domain Domain
PF00041 fn3 529 610 Fibronectin type III domain Domain
PF00041 fn3 624 708 Fibronectin type III domain Domain
PF00041 fn3 727 807 Fibronectin type III domain Domain
PF00041 fn3 845 932 Fibronectin type III domain Domain
PF00041 fn3 946 1034 Fibronectin type III domain Domain
PF06583 Neogenin_C 1148 1445 Neogenin C-terminus Family
Tissue specificity TISSUE SPECIFICITY: Found in axons of the central and peripheral nervous system and in differentiated cell types of the intestine. Not expressed in colorectal tumor cells that lost their capacity to differentiate into mucus producing cells. {ECO:0000269|P
Sequence
MENSLRCVWVPKLAFVLFGASLFSAHLQVTGFQIKAFTALRFLSEPSDAVTMRGGNVLLD
CSAESDRGVPVIKWKKDGIHLALGMDERKQQLSNGSLLIQNILHSRHHKPDEGLYQCEAS
LGDSGSIISRTAKVAVAGPLRFLSQTESVTAFMGDTVLLKCEVIGEPMPTIHWQKNQQDL
TPIPGDSRVVVLPSGALQISRLQPGDIGIYRCSARNPASSRTGNEAEVRI
LSDPGLHRQL
YFLQRPSNVVAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV
TDDDSGMYTCVVTYKNENISASAELTV
LVPPWFLNHPSNLYAYESMDIEFECTVSGKPVP
TVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQTSAQLIV
PKP
AIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTT
QPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS
QPIKVATQPELQVPGPVENLQAVSTS
PTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLA
YNRYGPGVST
DDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKI
RHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS
NWYTAETPENDL
DESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRY
YSIERLESSSHYVISLKAFNNAGEGVP
LYESATTRSITDPTDPVDYYPLLDDFPTSVPDL
STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDT
TSLSYTATGLKPNTMYEFSVMVTKNRRSSTWS
MTAHATTYEAAPTSAPKDLTVITREGKP
RAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYF
RIQARNSKGVGPLS
DPILFRTLKVEHPDKMANDQGRHGDGGYWPVDTNLIDRSTLNEPPI
GQMHPPHGSVTPQKNSNLLVIIVVTVGVITVLVVVIVAVICTRRSSAQQRKKRATHSAGK
RKGSQKDLRPPDLWIHHEEMEMKNIEKPSGTDPAGRDSPIQSCQDLTPVSHSQSETQLGS
KSTSHSGQDTEEAGSSMSTLERSLAARRAPRAKLMIPMDAQSNNPAVVSAIPVPTLESAQ
YPGILPSPTCGYPHPQFTLRPVPFPTLSVDRGFGAGRSQSVSEGPTTQQPPMLPPSQPEH
SSSEEAPSRTIPTACVRPTHPLRSFANPLLPPPMSAIEPKVPYTPLLSQPGPTLPKTHVK
TASLGLAGKARSPLLPVSVPTAPEVSEESHKPTEDSANVYEQDDLSEQMASLEGLMKQLN
AITGS
AF
Sequence length 1447
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Axon guidance
Pathways in cancer
Colorectal cancer
  Netrin-1 signaling
DCC mediated attractive signaling
Caspase activation via Dependence Receptors in the absence of ligand
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
133
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autism spectrum disorder Likely pathogenic rs2511454945 RCV003127317
Carcinoma of colon Pathogenic rs387906555 RCV000018603
Colorectal cancer Pathogenic rs2040184914 RCV001293822
Corpus callosum, agenesis of Pathogenic rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057 RCV000416354
RCV000416317
RCV000416340
RCV000416336
RCV000416322
RCV000416342
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs773315729, rs374199141, rs1057519058, rs748112308 -
Amenorrhea Uncertain significance; Conflicting classifications of pathogenicity rs181197485, rs187939463, rs141813053 RCV001849763
RCV001849764
RCV001849325
Malignant tumor of esophagus Likely benign; Benign rs375401214, rs141716650, rs138143831, rs112558388, rs186819956 RCV005926458
RCV002489314
RCV002501429
RCV002507554
RCV002502996
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 10389977, 8440743
Adenocarcinoma Mucinous Associate 10389977
Adenomatous Polyposis Coli Associate 9545410
Agenesis of Corpus Callosum Associate 28250454
Allanson Pantzar McLeod syndrome Associate 36889039
Anhedonia Associate 37487843
Anxiety Associate 39681175
Aphasia Associate 36889039
Astrocytoma Inhibit 11684721
Attention Deficit Disorder with Hyperactivity Associate 36889039