Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1630
Gene name Gene Name - the full gene name approved by the HGNC.
DCC netrin 1 receptor
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
DCC
Synonyms (NCBI Gene) Gene synonyms aliases
CRC18, CRCR1, HGPPS2, IGDCC1, MRMV1, NTN1R1
Chromosome Chromosome number
18
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
18q21.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a netrin 1 receptor. The transmembrane protein is a member of the immunoglobulin superfamily of cell adhesion molecules, and mediates axon guidance of neuronal growth cones towards sources of netrin 1 ligand. The cytoplasmic tail interac
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121912967 T>C Pathogenic Missense variant, genic upstream transcript variant, coding sequence variant
rs199651452 A>T Pathogenic Missense variant, coding sequence variant
rs387906555 C>A,G,T Pathogenic Missense variant, coding sequence variant
rs748112308 G>A Pathogenic Coding sequence variant, missense variant
rs754914260 C>A,T Pathogenic Stop gained, synonymous variant, genic upstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT022668 hsa-miR-124-3p Microarray 18668037
MIRT721068 hsa-miR-3606-3p HITS-CLIP 19536157
MIRT721067 hsa-miR-513a-3p HITS-CLIP 19536157
MIRT721066 hsa-miR-513c-3p HITS-CLIP 19536157
MIRT721065 hsa-miR-105-5p HITS-CLIP 19536157
Transcription factors
Transcription factor Regulation Reference
SOX9 Activation 19745029
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001764 Process Neuron migration IBA
GO:0001764 Process Neuron migration IEA
GO:0004888 Function Transmembrane signaling receptor activity TAS 8861902
GO:0005515 Function Protein binding IPI 11527412, 12011067, 16537496, 18585357, 19721007, 20434207, 21642953, 22084112, 26190107
GO:0005829 Component Cytosol TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
120470 2701 ENSG00000187323
Protein
UniProt ID P43146
Protein name Netrin receptor DCC (Colorectal cancer suppressor) (Immunoglobulin superfamily DCC subclass member 1) (Tumor suppressor protein DCC)
Protein function Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal growth cones in the developing nervous system upon ligand binding. Its association with UNC5 proteins may trigger signaling for axon repulsion. It also acts as
PDB 2ED7 , 2ED8 , 2ED9 , 2EDB , 2EDD , 2EDE , 3AU4 , 4URT , 5X83
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 140 230 Immunoglobulin I-set domain Domain
PF07679 I-set 240 327 Immunoglobulin I-set domain Domain
PF07679 I-set 331 417 Immunoglobulin I-set domain Domain
PF00041 fn3 430 514 Fibronectin type III domain Domain
PF00041 fn3 529 610 Fibronectin type III domain Domain
PF00041 fn3 624 708 Fibronectin type III domain Domain
PF00041 fn3 727 807 Fibronectin type III domain Domain
PF00041 fn3 845 932 Fibronectin type III domain Domain
PF00041 fn3 946 1034 Fibronectin type III domain Domain
PF06583 Neogenin_C 1148 1445 Neogenin C-terminus Family
Tissue specificity TISSUE SPECIFICITY: Found in axons of the central and peripheral nervous system and in differentiated cell types of the intestine. Not expressed in colorectal tumor cells that lost their capacity to differentiate into mucus producing cells. {ECO:0000269|P
Sequence
MENSLRCVWVPKLAFVLFGASLFSAHLQVTGFQIKAFTALRFLSEPSDAVTMRGGNVLLD
CSAESDRGVPVIKWKKDGIHLALGMDERKQQLSNGSLLIQNILHSRHHKPDEGLYQCEAS
LGDSGSIISRTAKVAVAGPLRFLSQTESVTAFMGDTVLLKCEVIGEPMPTIHWQKNQQDL
TPIPGDSRVVVLPSGALQISRLQPGDIGIYRCSARNPASSRTGNEAEVRI
LSDPGLHRQL
YFLQRPSNVVAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV
TDDDSGMYTCVVTYKNENISASAELTV
LVPPWFLNHPSNLYAYESMDIEFECTVSGKPVP
TVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQTSAQLIV
PKP
AIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTT
QPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS
QPIKVATQPELQVPGPVENLQAVSTS
PTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLA
YNRYGPGVST
DDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKI
RHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS
NWYTAETPENDL
DESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRY
YSIERLESSSHYVISLKAFNNAGEGVP
LYESATTRSITDPTDPVDYYPLLDDFPTSVPDL
STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDT
TSLSYTATGLKPNTMYEFSVMVTKNRRSSTWS
MTAHATTYEAAPTSAPKDLTVITREGKP
RAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYF
RIQARNSKGVGPLS
DPILFRTLKVEHPDKMANDQGRHGDGGYWPVDTNLIDRSTLNEPPI
GQMHPPHGSVTPQKNSNLLVIIVVTVGVITVLVVVIVAVICTRRSSAQQRKKRATHSAGK
RKGSQKDLRPPDLWIHHEEMEMKNIEKPSGTDPAGRDSPIQSCQDLTPVSHSQSETQLGS
KSTSHSGQDTEEAGSSMSTLERSLAARRAPRAKLMIPMDAQSNNPAVVSAIPVPTLESAQ
YPGILPSPTCGYPHPQFTLRPVPFPTLSVDRGFGAGRSQSVSEGPTTQQPPMLPPSQPEH
SSSEEAPSRTIPTACVRPTHPLRSFANPLLPPPMSAIEPKVPYTPLLSQPGPTLPKTHVK
TASLGLAGKARSPLLPVSVPTAPEVSEESHKPTEDSANVYEQDDLSEQMASLEGLMKQLN
AITGS
AF
Sequence length 1447
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Axon guidance
Pathways in cancer
Colorectal cancer
  Netrin-1 signaling
DCC mediated attractive signaling
Caspase activation via Dependence Receptors in the absence of ligand
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Agenesis Of Corpus Callosum Corpus callosum, agenesis of rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057 N/A
Gaze Palsy, With Progressive Scoliosis gaze palsy, familial horizontal, with progressive scoliosis, 2 rs1555682265 N/A
ESOPHAGEAL CARCINOMA esophageal carcinoma, somatic rs121912967 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
autism spectrum disorder Autism spectrum disorder N/A N/A ClinVar
Coenzyme Q10 Deficiency Coenzyme Q10 levels N/A N/A GWAS
colorectal cancer Colorectal cancer N/A N/A ClinVar
Colorectal Cancer colorectal cancer N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 10389977, 8440743
Adenocarcinoma Mucinous Associate 10389977
Adenomatous Polyposis Coli Associate 9545410
Agenesis of Corpus Callosum Associate 28250454
Allanson Pantzar McLeod syndrome Associate 36889039
Anhedonia Associate 37487843
Anxiety Associate 39681175
Aphasia Associate 36889039
Astrocytoma Inhibit 11684721
Attention Deficit Disorder with Hyperactivity Associate 36889039