Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
160335
Gene name Gene Name - the full gene name approved by the HGNC.
Transmembrane O-mannosyltransferase targeting cadherins 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TMTC2
Synonyms (NCBI Gene) Gene synonyms aliases
IBDBP1
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q21.31
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is an integral membrane protein localized to the endoplasmic reticulum (ER). The encoded protein contains many tetratricopeptide repeats, sequences known for being involved in protein-protein interactions. This protein bin
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019093 hsa-miR-335-5p Microarray 18185580
MIRT023168 hsa-miR-124-3p Microarray 18668037
MIRT024810 hsa-miR-215-5p Microarray 19074876
MIRT026937 hsa-miR-192-5p Microarray 19074876
MIRT639562 hsa-miR-6734-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000030 Function Mannosyltransferase activity IMP 28973932
GO:0004169 Function Dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
GO:0005515 Function Protein binding IPI 24764305
GO:0005783 Component Endoplasmic reticulum IDA
GO:0005789 Component Endoplasmic reticulum membrane IDA 24764305
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
615856 25440 ENSG00000179104
Protein
UniProt ID Q8N394
Protein name Protein O-mannosyl-transferase TMTC2 (EC 2.4.1.109) (Transmembrane O-mannosyltransferase targeting cadherins 2) (Transmembrane and tetratricopeptide repeat-containing 2)
Protein function Transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases dedicated primarily to the cadherin superfamily, each member seems to have a distinct role in decorat
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08409 DUF1736 247 321 Domain of unknown function (DUF1736) Family
PF13181 TPR_8 493 526 Tetratricopeptide repeat Repeat
PF13181 TPR_8 527 560 Tetratricopeptide repeat Repeat
PF13424 TPR_12 559 637 Repeat
PF13181 TPR_8 677 710 Tetratricopeptide repeat Repeat
PF00515 TPR_1 779 812 Tetratricopeptide repeat Repeat
Sequence
MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSG
SHKSYRPLCTLSFRLNHAIGGLNPWSYHLVNVLLHAAVTGLFTSFSKILLGDGYWTFMAG
LMFASHPIHTEAVAGIVGRADVGASLFFLLSLLCYIKHCSTRGYSARTWGWFLGSGLCAG
CSMLWKEQGVTVLAVSAVYDVFVFHRLKIKQILPTIYKRKNLSLFLSISLLIFWGSSLLG
ARLYWMGNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVP
LLKTVCDWRNLHTVAFYTGLL
LLAYYGLKSPSVDRECNGKTVTNGKQNANGHSCLSDVEY
QNSETKSSFASKVENGIKNDVSQRTQLPSTENIVVLSLSLLIIPFVPATNLFFYVGFVIA
ERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNE
EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQEN
SRFAEALHYYKLAIGSRP
TLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHA
HKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQKMP
RQFAPQSLYNMMGEAYMRLSKLP
EAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQF
LLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPA
ALMNLGAILHLNGRLQKAEANYLRALQLKPDD
VITQSNLRKLWNIMEKQGLKTSKT
Sequence length 836
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Deafness Prelingual Deafness, Deafness, Acquired, Deaf Mutism rs267607135, rs387906219, rs387906220, rs387906221, rs387906222, rs606231120, rs267606855, rs121918370, rs137853185, rs137853186, rs137853187, rs137853188, rs587776522, rs587776523, rs200781822
View all (1019 more)
27311106
Nonsyndromic deafness Nonsyndromic Deafness rs606231410, rs794729665, rs730880338, rs1566538321 27311106
Unknown
Disease term Disease name Evidence References Source
Asthma Asthma GWAS
Hypertension Hypertension GWAS
Associations from Text Mining
Disease Name Relationship Type References
Hearing Loss Sensorineural Associate 27311106
Lymphoma Non Hodgkin Associate 35933643
Neoplasms Associate 39251997
Parkinson Disease Associate 30665415
Pulmonary Disease Chronic Obstructive Associate 39251997