Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1591
Gene name Gene Name - the full gene name approved by the HGNC.
Cytochrome P450 family 24 subfamily A member 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CYP24A1
Synonyms (NCBI Gene) Gene synonyms aliases
CP24, CYP24, HCAI, HCINF1, P450-CC24
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20q13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This mitochondrial
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs6068812 A>G Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs35051736 C>G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs35873579 G>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant, synonymous variant
rs114368325 G>A,C Pathogenic Coding sequence variant, missense variant
rs139763321 A>G Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004408 hsa-miR-125b-5p qRT-PCR, Luciferase reporter assay, Western blot, Northern blot 19570947
MIRT004408 hsa-miR-125b-5p Review 20026422
MIRT004408 hsa-miR-125b-5p Reporter assay 19570947
MIRT024646 hsa-miR-215-5p Microarray 19074876
MIRT026473 hsa-miR-192-5p Microarray 19074876
Transcription factors
Transcription factor Regulation Reference
VDR Activation 23463632
VDR Repression 9687155
VDR Unknown 19244278;19429444;21763285
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001649 Process Osteoblast differentiation IEP 17023519
GO:0004497 Function Monooxygenase activity IEA
GO:0005506 Function Iron ion binding IEA
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
126065 2602 ENSG00000019186
Protein
UniProt ID Q07973
Protein name 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial (24-OHase) (Vitamin D(3) 24-hydroxylase) (EC 1.14.15.16) (Cytochrome P450 24A1) (Cytochrome P450-CC24)
Protein function A cytochrome P450 monooxygenase with a key role in vitamin D catabolism and calcium homeostasis. Via C24- and C23-oxidation pathways, catalyzes the inactivation of both the vitamin D precursor calcidiol (25-hydroxyvitamin D(3)) and the active ho
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00067 p450 58 512 Cytochrome P450 Domain
Sequence
Sequence length 514
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Steroid biosynthesis
Metabolic pathways
Parathyroid hormone synthesis, secretion and action
MicroRNAs in cancer
  Vitamin D (calciferol) metabolism
Vitamins
Defective CYP24A1 causes Hypercalcemia, infantile (HCAI)
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hypercalcemia hypercalcemia, infantile, 1 rs777947329, rs139763321, rs774432244, rs781367354, rs876657376, rs387907322, rs777676129, rs387907323, rs114368325, rs6068812, rs387907324 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Colorectal Cancer Colorectal cancer (oestrogen-progestogen hormone therapy interaction) N/A N/A GWAS
Dermatitis Atopic dermatitis N/A N/A GWAS
Eczema Eczema N/A N/A GWAS
Hypercalciuria Infantile hypercalcemia N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abortion Spontaneous Associate 38195505
Adenocarcinoma Associate 19901270, 24736069, 25090635
Adenocarcinoma of Lung Associate 21169243, 24736069, 32165494, 32998690, 34323652, 35664356
Adenoma Stimulate 22511602
Adenoma Associate 26241700
Adenomyosis Associate 38195505
Arthritis Rheumatoid Associate 34925313
Asthma Associate 16600026, 19852851, 21613960, 36839181
Bone Diseases Associate 22337913
Breast Neoplasms Associate 14760115, 15863722, 16280049, 19667160, 20440542, 22480149, 22649517, 23393347, 25421379, 25736056, 31548577, 34003583