Gene Gene information from NCBI Gene database.
Entrez ID 153241
Gene name Centrosomal protein 120
Gene symbol CEP120
Synonyms (NCBI Gene)
CCDC100JBTS31SRTD13
Chromosome 5
Chromosome location 5q23.2
Summary This gene encodes a protein that functions in the microtubule-dependent coupling of the nucleus and the centrosome. A similar protein in mouse plays a role in both interkinetic nuclear migration, which is a characteristic pattern of nuclear movement in ne
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs114280473 G>A Pathogenic, benign Coding sequence variant, non coding transcript variant, missense variant
rs367600930 C>G Pathogenic Missense variant, coding sequence variant, non coding transcript variant, 5 prime UTR variant
rs757499322 G>A,C Pathogenic Missense variant, 5 prime UTR variant, non coding transcript variant, coding sequence variant, stop gained
rs759125480 G>A Likely-pathogenic Stop gained, non coding transcript variant, coding sequence variant
rs775080726 G>A,C Pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
253
miRTarBase ID miRNA Experiments Reference
MIRT026036 hsa-miR-196a-5p Sequencing 20371350
MIRT032139 hsa-let-7d-5p Sequencing 20371350
MIRT050547 hsa-miR-20a-5p CLASH 23622248
MIRT494306 hsa-miR-548aa PAR-CLIP 23592263
MIRT494305 hsa-miR-548ap-3p PAR-CLIP 23592263
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
30
GO ID Ontology Definition Evidence Reference
GO:0000226 Process Microtubule cytoskeleton organization IEA
GO:0005515 Function Protein binding IPI 26638075
GO:0005737 Component Cytoplasm IEA
GO:0005813 Component Centrosome IBA
GO:0005813 Component Centrosome IDA 21399614, 36590171
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613446 26690 ENSG00000168944
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N960
Protein name Centrosomal protein of 120 kDa (Cep120) (Coiled-coil domain-containing protein 100)
Protein function Plays a role in the microtubule-dependent coupling of the nucleus and the centrosome. Involved in the processes that regulate centrosome-mediated interkinetic nuclear migration (INM) of neural progenitors and for proper positioning of neurons du
PDB 4ICW , 4ICX , 6FLJ , 6FLK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00168 C2 9 114 C2 domain Domain
PF12416 DUF3668 118 340 Cep120 protein Family
PF00168 C2 517 565 C2 domain Domain
Sequence
MVSKSDQLLIVVSILEGRHFPKRPKHMLVVEAKFDGEQLATDPVDHTDQPEFATELAWEI
DRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIVLDLRTAQETKQAPKWYQL
LSNKYT
KFKSEIQISIALETDTKPPVDSFKAKGAPPRDGKVPAILAGLDPRDIVAVLNEEGGYHQI
GPAEYCTDSFIMSVTIAFATQLEQLIPCTMKLPERQPEFFFYYSLLGNDVTNEPFNDLIN
PNFEPERASVRIRSSVEILRVYLALQSKLQIHLCCGDQSLGSTEIPLTGLLKKGSTEINQ
HPVTVEGAFTLDPPNRAKQKLAPIPVELAPTVGVSVALQR
EGIDSQSLIELKTQNEHEPE
HSKKKVLTPIKEKTLTGPKSPTVSPVPSHNQSPPTKDDATESEVESLQYDKDTKPNPKAS
SSVPASLAQLVTTSNASEVASGQKIAVPATSHHFCFSIDLRSIHALEIGFPINCILRYSY
PFFGSAAPIMTNPPVEVRKNMEVFLPQSYCAFDFATMPHQLQDTFLRIPLLVELWHKDKM
SKDLLLGIARIQLSNILSSEKTRFL
GSNGEQCWRQTYSESVPVIAAQGSNNRIADLSYTV
TLEDYGLVKMREIFISDSSQGVSAVQQKPSSLPPAPCPSEIQTEPRETLEYKAALELEMW
KEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVKKKVAEYTILEGKLQKTLIDLE
KREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELERLKIKQLEEDK
HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSEINLLTLEKVELERKLESATKS
KLHYKQQWGRALKELARLKQREQESQMARLKKQQEELEQMRLRYLAAEEKDTVKTERQEL
LDIRNELNRLRQQEQKQYQDSTEIASGKKDGPHGSVLEEGLDDYLTRLIEERDTLMRTGV
YNHEDRIISELDRQIREILAKSNASN
Sequence length 986
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
438
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Chuvash polycythemia Likely pathogenic rs757499322 RCV004813107
Joubert syndrome 31 Likely pathogenic; Pathogenic rs781434539, rs1554104276, rs1554102026, rs1554103267 RCV005432827
RCV000515139
RCV000515151
RCV000515141
Short-rib thoracic dysplasia 13 with or without polydactyly Pathogenic; Likely pathogenic rs1772529903, rs2127034914, rs2127055990, rs2127071022, rs2127056186, rs774440370, rs781434539, rs2127059805, rs367600930, rs2479298976, rs552760651, rs2479304832, rs1228099402, rs2479747890, rs2479788124
View all (7 more)
RCV001328697
RCV001390516
RCV001381900
RCV001390876
RCV003992550
RCV001990462
RCV001885747
RCV002249340
RCV000169771
RCV003076317
RCV002761225
RCV002922497
RCV002947807
RCV003752244
RCV003752433
RCV003750298
RCV003751280
RCV003814922
RCV003870580
RCV000515146
RCV000515150
RCV000761598
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs7726814, rs6895901 RCV005915285
RCV005923249
CEP120-related disorder Uncertain significance; Likely benign; Benign; Conflicting classifications of pathogenicity rs375851614, rs764744920, rs376913078, rs140836572, rs199793672, rs200418811, rs142459804, rs781621962, rs548355953, rs552897498, rs571743687, rs746167728, rs369212214, rs765441006, rs756593532
View all (13 more)
RCV004757401
RCV003983892
RCV004757461
RCV003931179
RCV003921223
RCV003978606
RCV003893100
RCV003893173
RCV003970926
RCV003953827
RCV003898779
RCV004731286
RCV003973512
RCV004757555
RCV003898654
RCV003964669
RCV003977415
RCV003899160
RCV003899171
RCV003927382
RCV003957397
RCV003925532
RCV003945677
RCV003907914
RCV003948007
RCV003975495
RCV003908365
RCV003928550
RCV003955898
Cervical cancer Benign rs6895901 RCV005923250
Cholangiocarcinoma Benign rs76942218 RCV005868277
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Agenesis of Cerebellar Vermis Associate 27208211, 30988386, 33297941, 33486889, 34711653
Agenesis of Corpus Callosum Associate 33270637
Cerebellar Hypoplasia Associate 34711653
Ciliopathies Associate 27208211, 30988386, 33297941, 33486889
Encephalocele Associate 27208211
Fibrosis Associate 37915003
Intervertebral Disc Degeneration Associate 37915003
Jeune syndrome Associate 27208211, 30988386, 33297941
Meckel syndrome type 1 Associate 27208211, 33486889
Multiple Myeloma Associate 35013207