Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1501
Gene name Gene Name - the full gene name approved by the HGNC.
Catenin delta 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CTNND2
Synonyms (NCBI Gene) Gene synonyms aliases
GT24, NPRAP
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5p15.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an adhesive junction associated protein of the armadillo/beta-catenin superfamily and is implicated in brain and eye development and cancer formation. The protein encoded by this gene promotes the disruption of E-cadherin based adherens
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs886041494 G>A,C Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant, stop gained
rs1057518120 T>C Likely-pathogenic Genic upstream transcript variant, missense variant, coding sequence variant, 5 prime UTR variant, intron variant
rs1064796494 G>T Likely-pathogenic Genic upstream transcript variant, upstream transcript variant, stop gained, coding sequence variant, intron variant
rs1554008611 T>C Likely-pathogenic Splice acceptor variant
rs1554046915 T>A Likely-pathogenic Coding sequence variant, 5 prime UTR variant, stop gained, intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT735742 hsa-miR-218-5p Luciferase reporter assay, Western blotting, qRT-PCR 31520422
MIRT915178 hsa-miR-1286 CLIP-seq
MIRT915179 hsa-miR-218 CLIP-seq
MIRT915180 hsa-miR-23a CLIP-seq
MIRT915181 hsa-miR-23b CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 19706605, 19706687, 22022388, 24550280, 25009281, 30126976
GO:0005634 Component Nucleus IBA 21873635
GO:0005737 Component Cytoplasm IBA 21873635
GO:0005886 Component Plasma membrane IBA 21873635
GO:0005912 Component Adherens junction IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604275 2516 ENSG00000169862
Protein
UniProt ID Q9UQB3
Protein name Catenin delta-2 (Delta-catenin) (GT24) (Neural plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin)
Protein function Has a critical role in neuronal development, particularly in the formation and/or maintenance of dendritic spines and synapses (PubMed:25807484). Involved in the regulation of Wnt signaling (PubMed:25807484). It probably acts on beta-catenin tur
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00514 Arm 581 621 Armadillo/beta-catenin-like repeat Repeat
PF00514 Arm 625 666 Armadillo/beta-catenin-like repeat Repeat
PF00514 Arm 834 875 Armadillo/beta-catenin-like repeat Repeat
PF00514 Arm 882 921 Armadillo/beta-catenin-like repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Expressed in brain; highest expression is observed in fetal brain (PubMed:25807484). {ECO:0000269|PubMed:25807484}.
Sequence
MFARKPPGAAPLGAMPVPDQPSSASEKTSSLSPGLNTSNGDGSETETTSAILASVKEQEL
QFERLTRELEAERQIVASQLERCKLGSETGSMSSMSSAEEQFQWQSQDGQKDIEDELTTG
LELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLAL
GETTPSQLPARGTQARATGQSFSQGTTSRAGHLAGPEPAPPPPPPPREPFAPSLGSAFHL
PDAPPAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGATYAAPRGSSP
KQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLS
PTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHI
DPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGTYRTSTAPSSPGVDSVPLQRTGSQHGPQN
AAAATFQRASYAAGPASNYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSIDSIQK
DPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDL
LDHRMTEVHRSACGALRNLVY
GKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGV
LWNLSS
CDALKMPIIQDALAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLR
NVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETS
QGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQM
LWHPSIVKPYLTLLSECSNPDTLEGAAGALQNLAA
GSWKWSVYIRAAVRKEKGLPILVEL
LRIDNDRVVCAVATALRNMAL
DVRNKELIGKYAMRDLVHRLPGGNNSNNTASKAMSDDTV
TAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYR
DLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREM
ISLKERKTDYECTGSNATYHGAKGEHTSRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQV
SAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDF
YSAARPYSELNYETSHYPASPDSWV
Sequence length 1225
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Wnt signaling pathway  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyotrophic lateral sclerosis AMYOTROPHIC LATERAL SCLEROSIS 6 (disorder), AMYOTROPHIC LATERAL SCLEROSIS 1, AUTOSOMAL RECESSIVE rs267607084, rs312262720, rs312262752, rs121908287, rs121908288, rs29001584, rs28941475, rs121434378, rs386134173, rs386134174, rs80356730, rs80356727, rs4884357, rs80356717, rs80356733
View all (171 more)
24529757
Autism Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
22843504
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Glioblastoma Glioblastoma, Glioblastoma Multiforme rs121913500, rs886042842, rs1555138291, rs1558518449, rs1567176006, rs1558650888 23917401
Unknown
Disease term Disease name Evidence References Source
Mental depression Unipolar Depression, Major Depressive Disorder 24256404 ClinVar
Benign Myoclonic Epilepsy benign adult familial myoclonic epilepsy GenCC
Neurodevelopmental Disorders complex neurodevelopmental disorder, neurodevelopmental disorder GenCC
Mental Depression Mental Depression GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Associate 18978817, 35164838
Adenocarcinoma of Lung Associate 32672359
Alzheimer Disease Associate 22022388, 22984439
Anxiety Associate 34236339
Anxiety Disorders Associate 24256404
Autism Spectrum Disorder Associate 25106414
Barrett Esophagus Associate 35164838
Carcinoma Hepatocellular Associate 24966965
Cataract Associate 22984439
Cataract Age Related Nuclear Associate 22984439