IGSF5 (immunoglobulin superfamily member 5)

Gene

• Entrez ID: 150084
• Gene name: Immunoglobulin superfamily member 5
• Gene symbol: IGSF5
• Synonyms (NCBI Gene): GSF5, JAM4
• Chromosome: 21
• Chromosome location: 21q22.2

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT1062766	hsa-miR-1297	CLIP-seq
MIRT1062767	hsa-miR-2052	CLIP-seq
MIRT1062768	hsa-miR-2110	CLIP-seq
MIRT1062769	hsa-miR-219-2-3p	CLIP-seq
MIRT1062770	hsa-miR-26a	CLIP-seq
MIRT1062771	hsa-miR-26b	CLIP-seq
MIRT1062772	hsa-miR-2964a-3p	CLIP-seq
MIRT1062773	hsa-miR-302a	CLIP-seq
MIRT1062774	hsa-miR-302b	CLIP-seq
MIRT1062775	hsa-miR-302c	CLIP-seq
MIRT1062776	hsa-miR-302d	CLIP-seq
MIRT1062777	hsa-miR-302e	CLIP-seq
MIRT1062778	hsa-miR-3150a-3p	CLIP-seq
MIRT1062779	hsa-miR-3157-5p	CLIP-seq
MIRT1062780	hsa-miR-3676	CLIP-seq
MIRT1062781	hsa-miR-372	CLIP-seq
MIRT1062782	hsa-miR-373	CLIP-seq
MIRT1062783	hsa-miR-4271	CLIP-seq
MIRT1062784	hsa-miR-4277	CLIP-seq
MIRT1062785	hsa-miR-4452	CLIP-seq
MIRT1062786	hsa-miR-4453	CLIP-seq
MIRT1062787	hsa-miR-4465	CLIP-seq
MIRT1062788	hsa-miR-4480	CLIP-seq
MIRT1062789	hsa-miR-4502	CLIP-seq
MIRT1062790	hsa-miR-4538	CLIP-seq
MIRT1062791	hsa-miR-4633-3p	CLIP-seq
MIRT1062792	hsa-miR-4643	CLIP-seq
MIRT1062793	hsa-miR-466	CLIP-seq
MIRT1062794	hsa-miR-4691-3p	CLIP-seq
MIRT1062795	hsa-miR-4694-5p	CLIP-seq
MIRT1062796	hsa-miR-4725-3p	CLIP-seq
MIRT1062797	hsa-miR-4747-5p	CLIP-seq
MIRT1062798	hsa-miR-4762-3p	CLIP-seq
MIRT1062799	hsa-miR-4789-3p	CLIP-seq
MIRT1062800	hsa-miR-520a-3p	CLIP-seq
MIRT1062801	hsa-miR-520b	CLIP-seq
MIRT1062802	hsa-miR-520c-3p	CLIP-seq
MIRT1062803	hsa-miR-520d-3p	CLIP-seq
MIRT1062804	hsa-miR-520e	CLIP-seq
MIRT1062805	hsa-miR-548an	CLIP-seq
MIRT2014810	hsa-miR-365	CLIP-seq
MIRT2014811	hsa-miR-4641	CLIP-seq
MIRT2247116	hsa-miR-490-5p	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005886	Component	Plasma membrane	IEA
GO:0005923	Component	Bicellular tight junction	IBA
GO:0005923	Component	Bicellular tight junction	IEA
GO:0009986	Component	Cell surface	IBA
GO:0016020	Component	Membrane	IEA
GO:0016324	Component	Apical plasma membrane	IEA
GO:0070161	Component	Anchoring junction	IEA
GO:0098609	Process	Cell-cell adhesion	IBA

Other IDs

• MIM: 610638
• HGNC: 5952
• e!Ensembl: ENSG00000183067

Protein

• UniProt ID: Q9NSI5
• Protein name: Immunoglobulin superfamily member 5 (IgSF5) (Junctional adhesion molecule 4) (JAM-4)
• Protein function: Provides, together with MAGI1, an adhesion machinery at tight junctions, which may regulate the permeability of kidney glomerulus and small intestinal epithelial cells. Mediates calcium-independent homophilic cell adhesion. In testis, it may fun
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF07679	I-set	39 → 140	Immunoglobulin I-set domain	Domain

• Sequence:

  MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC
  TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN
  IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL
  LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD
  TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC
  CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE
  SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV

• Sequence length: 407

Pathways

KEGG:

Tight junction
Epithelial cell signaling in Helicobacter pylori infection

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Associated diseases

Unknown
Disease merge term	Disease name	Evidence	References	Source
Asthma	Asthma	N/A	N/A	GWAS
Breast Cancer	Breast cancer	N/A	N/A	GWAS
Hypertension	Hypertension	N/A	N/A	GWAS

Associations from Text Mining
Disease Name	Relationship Type	References
Asthma	Associate	35524249
Inflammation	Associate	28206970
Non alcoholic Fatty Liver Disease	Associate	28206970
Obesity	Associate	35524249
Squamous Cell Carcinoma of Head and Neck	Associate	33506058