Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1487
Gene name Gene Name - the full gene name approved by the HGNC.
C-terminal binding protein 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CTBP1
Synonyms (NCBI Gene) Gene synonyms aliases
BARS, HADDTS
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4p16.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that binds to the C-terminus of adenovirus E1A proteins. This phosphoprotein is a transcriptional repressor and may play a role during cellular proliferation. This protein and the product of a second closely related gene, CTBP2
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT005605 hsa-miR-137 Luciferase reporter assay, qRT-PCR, Western blot 21278922
MIRT005605 hsa-miR-137 Luciferase reporter assay, qRT-PCR, Western blot 21278922
MIRT005605 hsa-miR-137 Reporter assay;Other 21278922
MIRT024026 hsa-miR-1-3p Proteomics 18668040
MIRT050145 hsa-miR-26a-5p CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 19162039, 21102443
GO:0001221 Function Transcription coregulator binding IBA
GO:0001222 Function Transcription corepressor binding IPI 29628311
GO:0003682 Function Chromatin binding IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602618 2494 ENSG00000159692
Protein
UniProt ID Q13363
Protein name C-terminal-binding protein 1 (CtBP1) (EC 1.1.1.-)
Protein function Corepressor targeting diverse transcription regulators such as GLIS2 or BCL6. Has dehydrogenase activity. Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex. Functions in brown adipose tissue (BAT
PDB 1MX3 , 4LCE , 4U6Q , 4U6S , 6CDF , 6CDR , 6V89 , 6V8A , 7KWM , 8ARI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00389 2-Hacid_dh 30 352 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Domain
PF02826 2-Hacid_dh_C 133 317 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in germinal center B-cells. {ECO:0000269|PubMed:18212045}.
Sequence
Sequence length 440
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Wnt signaling pathway
Notch signaling pathway
Pathways in cancer
Chronic myeloid leukemia
  Deactivation of the beta-catenin transactivating complex
SUMOylation of transcription cofactors
Repression of WNT target genes
TCF7L2 mutants don't bind CTBP
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hypotonia, Ataxia, Developmental Delay, And Tooth Enamel Defect Syndrome hypotonia, ataxia, developmental delay, and tooth enamel defect syndrome rs869320802 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Diabetes Type 2 diabetes, Type 2 diabetes (PheCode 250.2), Type 2 diabetes (adjusted for BMI) N/A N/A GWAS
Microcephaly microcephaly N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 31059077, 37240137
Alzheimer Disease Associate 40302267
Ataxia Associate 31041561, 36610307
Breast Neoplasms Associate 20964627, 21681822, 30423315, 31534138
Carcinoma Hepatocellular Associate 24440974, 31860631
Carcinoma Non Small Cell Lung Associate 32910558
Carcinoma Pancreatic Ductal Associate 18098271
Cell Transformation Neoplastic Associate 23318885
Cerebral Ventricle Neoplasms Associate 9788966
Colonic Neoplasms Stimulate 20383323