Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
147741
Gene name Gene Name - the full gene name approved by the HGNC.
Zinc finger protein 560
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ZNF560
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19p13.2
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1529581 hsa-miR-139-5p CLIP-seq
MIRT1529582 hsa-miR-4302 CLIP-seq
MIRT1529583 hsa-miR-4684-5p CLIP-seq
MIRT1529584 hsa-miR-4768-5p CLIP-seq
MIRT1529585 hsa-miR-5095 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA 21873635
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA 21873635
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA 21873635
GO:0001227 Function DNA-binding transcription repressor activity, RNA polymerase II-specific IBA 21873635
GO:0005634 Component Nucleus IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
HGNC N/A HGNC
Protein
UniProt ID Q96MR9
Protein name Zinc finger protein 560
Protein function May be involved in transcriptional regulation.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01352 KRAB 12 53 KRAB box Family
PF01352 KRAB 109 150 KRAB box Family
PF00096 zf-C2H2 348 370 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 376 398 Zinc finger, C2H2 type Domain
PF13912 zf-C2H2_6 404 429 Domain
PF13912 zf-C2H2_6 431 457 Domain
PF13912 zf-C2H2_6 487 513 Domain
PF00096 zf-C2H2 516 538 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 544 566 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 572 594 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 600 622 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 631 650 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 712 734 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 740 762 Zinc finger, C2H2 type Domain
PF13912 zf-C2H2_6 768 790 Domain
Sequence
MAYCLTNCYQYSVTFEDTAVDFTQEEWILLDPVQRNLYRDVMLENYENVAKVGFQLFKPS
VISWLEEEELRTLQQGVLQDWAIKHQTSVSALQQEFWKIQTSNGIQMDLVTFDSVAVEFT
QEEWTLLDPAQRNLYSDVMLENYKNLSSVG
YQLFKPSLISWLEEEEELSTLPRVLQEWKM
CLKTKGPALWQDNFCLKTLNGIQLARNQNGEELYDCKQCEDVFCKHPCLKTNMSTQNRGN
TSECIQYAKDLLSLYNKTSTIRKVSVFSKHGKSFRLILNVQVQRKCTQDKSFEGTDYGKA
FIYQSYLEAHRKTQSGEKLNEWKQCGEAFTHSTSHAVNVETHIIKNPYECKECGKDFRYP
THLNNHMQTH
IGIKPYKCKHCGKTFTVPSGFLEHVRTHTGEKPYGCKECGKAFGTSAGLI
EHIRCHARE
KTFKCDHCGKAFISYPSLFGHLRVHNGEKPYEHKEYGKAFGTSSGVIEDRR
SNTGQKRFDCDQCGKVFVSFSSLFAHLRTHTGEKPFKCYKCGKPFTSSACLRIHMRTHTE
ERLYQCKKCGKAFTKCSYLTKHLRTHAGEKPYECMKCGKAFTERSYLTKHLRRHSGEKPY
ECKKCGKAFTERSDLTKHLRRH
TGDKPYEYKDCGKAFVVSSSLVDHLRTHTGYKPYKCNA
CEKAYSRSCVLTQHLKTHAAEKTSECNACGNSFRNSMCFHDRLKTLTKIKPYKCKDCGKA
FTCHSDLTNHVRIH
TGEKPYKCKECGKAFRTSSGRIQHLRTHMGEKPFECDQCGKAFASF
SARIAHLKTH
Sequence length 790
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Generic Transcription Pathway
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 30419062
Melanoma Associate 29912415
Small Cell Lung Carcinoma Associate 30419062