Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1474
Gene name Gene Name - the full gene name approved by the HGNC.
Cystatin E/M
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CST6
Synonyms (NCBI Gene) Gene synonyms aliases
ECTD15
Disease Acronyms (UniProt) Disease acronyms from UniProt database
ECTD15
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q13.1
Summary Summary of gene provided in NCBI Entrez Gene.
The cystatin superfamily encompasses proteins that contain multiple cystatin-like sequences. Some of the members are active cysteine protease inhibitors, while others have lost or perhaps never acquired this inhibitory activity. There are three inhibitory
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1590674994 C>T Pathogenic Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018413 hsa-miR-335-5p Microarray 18185580
MIRT2386543 hsa-miR-1249 CLIP-seq
MIRT2386544 hsa-miR-4652-5p CLIP-seq
MIRT2386545 hsa-miR-542-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001533 Component Cornified envelope IEA
GO:0004869 Function Cysteine-type endopeptidase inhibitor activity IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0008544 Process Epidermis development IEA
GO:0009653 Process Anatomical structure morphogenesis TAS 9099741
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601891 2478 ENSG00000175315
Protein
UniProt ID Q15828
Protein name Cystatin-M (Cystatin-6) (Cystatin-E)
Protein function High affinity inhibitor for cathepsin L, cathepsin L2 (cathepsin V), and legumain (PubMed:30425301). Involved in the regulation of epidermal cornification, and hair follicle morphogenesis and maintenance (PubMed:30425301). {ECO:0000269|PubMed:30
PDB 4N6L , 4N6M , 4N6N , 4N6O , 6FK0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00031 Cystatin 36 135 Cystatin domain Domain
Tissue specificity TISSUE SPECIFICITY: Restricted to the stratum granulosum of normal skin, the stratum granulosum/spinosum of psoriatic skin, and the secretory coils of eccrine sweat glands. Low expression levels are found in the nasal cavity. {ECO:0000269|PubMed:11348457}
Sequence
Sequence length 149
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
17043665
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
17043665
Lung carcinoma Non-Small Cell Lung Carcinoma rs1805076, rs121909071, rs121913530, rs112445441, rs121913529, rs121913535, rs121913297, rs121913279, rs104886003, rs397516975, rs11554290, rs121913364, rs121913351, rs121913369, rs121913355
View all (44 more)
17043644
Marfan syndrome Mammary Carcinoma, Human rs137854456, rs137854457, rs267606796, rs137854458, rs137854459, rs137854460, rs137854470, rs137854471, rs267606797, rs137854461, rs137854462, rs137854463, rs869025419, rs137854464, rs137854465
View all (942 more)
17043665
Unknown
Disease term Disease name Evidence References Source
Ectodermal Dysplasia ectodermal dysplasia 15, hypohidrotic/hair type GenCC
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 24398667
Bites Human Inhibit 30425301
Blepharitis Associate 30425301
Bone Diseases Inhibit 35881476
Brain Neoplasms Inhibit 18607344
Breast Neoplasms Inhibit 17043665, 17540367, 19074894, 8995380
Breast Neoplasms Associate 18221536, 21092257, 21283676, 23088560, 24297604, 24742492
Calcinosis Cutis Inhibit 17540367
Carcinoma Hepatocellular Associate 31115549
Carcinoma Intraductal Noninfiltrating Associate 21092257