Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
142
Gene name Gene Name - the full gene name approved by the HGNC.
Poly(ADP-ribose) polymerase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PARP1
Synonyms (NCBI Gene) Gene synonyms aliases
ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1, PARS, PPOL, Poly-PARP, pADPRT-1
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q42.12
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a chromatin-associated enzyme, poly(ADP-ribosyl)transferase, which modifies various nuclear proteins by poly(ADP-ribosyl)ation. The modification is dependent on DNA and is involved in the regulation of various important cellular processe
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019791 hsa-miR-375 qRT-PCR;Microarray 20584986
MIRT030724 hsa-miR-21-5p Microarray 18591254
MIRT052650 hsa-miR-223-3p Luciferase reporter assay, Microarray, qRT-PCR, Western blot 23757351
MIRT046137 hsa-miR-30b-5p CLASH 23622248
MIRT046091 hsa-miR-125b-5p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
EP300 Unknown 17065349
ETS1 Activation 11973649;24448423
ETS1 Repression 10435618
YY1 Unknown 9367892
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 15607977, 22464733
GO:0000122 Process Negative regulation of transcription by RNA polymerase II TAS
GO:0000723 Process Telomere maintenance TAS 25749521
GO:0000724 Process Double-strand break repair via homologous recombination IDA 18417535, 26811421, 35597237
GO:0000781 Component Chromosome, telomeric region HDA 19135898
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
173870 270 ENSG00000143799
Protein
UniProt ID P09874
Protein name Poly [ADP-ribose] polymerase 1 (PARP-1) (EC 2.4.2.30) (ADP-ribosyltransferase diphtheria toxin-like 1) (ARTD1) (DNA ADP-ribosyltransferase PARP1) (EC 2.4.2.-) (NAD(+) ADP-ribosyltransferase 1) (ADPRT 1) (Poly[ADP-ribose] synthase 1) (Protein poly-ADP-ribo
Protein function Poly-ADP-ribosyltransferase that mediates poly-ADP-ribosylation of proteins and plays a key role in DNA repair (PubMed:17177976, PubMed:18055453, PubMed:18172500, PubMed:19344625, PubMed:19661379, PubMed:20388712, PubMed:21680843, PubMed:2258226
PDB 1UK0 , 1UK1 , 1WOK , 2COK , 2CR9 , 2CS2 , 2DMJ , 2JVN , 2L30 , 2L31 , 2N8A , 2RCW , 2RD6 , 2RIQ , 3GJW , 3GN7 , 3L3L , 3L3M , 3OD8 , 3ODA , 3ODC , 3ODE , 4AV1 , 4DQY , 4GV7 , 4HHY , 4HHZ , 4L6S , 4OPX , 4OQA , 4OQB , 4PJT , 4R5W , 4R6E , 4RV6 , 4UND , 4UXB , 4XHU , 4ZZZ , 5A00 , 5DS3 , 5HA9 , 5KPN , 5KPO , 5KPP , 5KPQ , 5WRQ , 5WRY , 5WRZ , 5WS0 , 5WS1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00645 zf-PARP 12 89 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Domain
PF00645 zf-PARP 116 199 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Domain
PF08063 PADR1 280 331 PADR1 (NUC008) domain Domain
PF00533 BRCT 385 462 BRCA1 C Terminus (BRCT) domain Family
PF05406 WGR 553 633 WGR domain Domain
PF02877 PARP_reg 663 794 Poly(ADP-ribose) polymerase, regulatory domain Domain
PF00644 PARP 808 1007 Poly(ADP-ribose) polymerase catalytic domain Family
Sequence
MAESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKV
GHSIRHPDVEVDGFSELRWDDQQKVKKTA
EAGGVTGKGQDGIGSKAEKTLGDFAAEYAKS
NRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQ
LKGFSLLATEDKEALKKQL
PGVKSEGKRKGDEVDGVDEVAKKKSKKEKDKDSKLEKALKA
QNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEECSG
QLVFKSDAYYCTGDVTAWTKCMVKTQTPNRK
EWVTPKEFREISYLKKLKVKKQDRIFPPE
TSASVAATPPPSTASAPAAVNSSASADKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT
GTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDV
SASTKSLQELFLAHILSP
WGAEVKAEPVEVVAPRGKSGAALSKKSKGQVKEEGINKSEKRMKLTLKGGAAVDPDSGLE
HSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNK
LEQMPSKEDAIEHFMKLYEEKTGNAWHSKNFTK
YPKKFYPLEIDYGQDEEAVKKLTVNPG
TKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAV
SQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRG
GSDDSSKDPIDVNY
EKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIE
REGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADM
VSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSA
NISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKF
NFKTSLW
Sequence length 1014
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Base excision repair
NF-kappa B signaling pathway
Apoptosis
Necroptosis
Diabetic cardiomyopathy
  POLB-Dependent Long Patch Base Excision Repair
Downregulation of SMAD2/3:SMAD4 transcriptional activity
SUMOylation of DNA damage response and repair proteins
HDR through MMEJ (alt-NHEJ)
DNA Damage Recognition in GG-NER
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Coronary artery disease Coronary artery disease N/A N/A GWAS
Hereditary Renal Carcinoma Hereditary renal cell carcinoma N/A N/A ClinVar
Melanoma Melanoma N/A N/A GWAS
Neurodevelopmental Disorders neurodevelopmental disorder N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Achalasia Addisonianism Alacrimia syndrome Associate 21138955, 36946269
Acute Kidney Injury Associate 29238179
Adenocarcinoma Associate 23757351, 25179837, 34531868
Adenocarcinoma of Lung Associate 23951099, 27655641, 29667179, 31386689, 34285141, 34531868, 35029906
Adrenocortical Carcinoma Associate 34531868, 35848940
Airway Obstruction Associate 32757651
Alzheimer Disease Associate 20486200, 27034851, 27234294, 28558704
Alzheimer Disease Inhibit 31827497
Anemia Aplastic Associate 38237741
Anophthalmia with pulmonary hypoplasia Associate 37449843